View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10534_17 (Length: 315)
Name: NF10534_17
Description: NF10534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10534_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 26080146 - 26080413
Alignment:
| Q |
1 |
agacctatccaaaattctgagagctcaacgattgtatgcaactgacgcatgagaactgttattcttatagggttgtggttgggcctcattatgctaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26080146 |
agacctatccaaaattctgagagctcaacgattgtatgcaactgacacatgagaactgttattcttatagggttgtggttgggcctcattatgctaaagt |
26080245 |
T |
|
| Q |
101 |
tgcatgaatattcagtttgaactatgacagaatcgcatggtgaatatgctaaacataatttagagtaatagaatgttttttaggccacatttaaggcata |
200 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26080246 |
tgcatgaatattcagtatgaactgtgacagaatcgcatggtgaacatgctaaacataatttagagtaatagaatgttttttaggccacatttaaggcata |
26080345 |
T |
|
| Q |
201 |
cctatgtaaaagggtgtaccggtcctccatcacttatttaccattagatttaatttgtttaactgatga |
269 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26080346 |
cctatgtaaaagggtgtaccgat-ctccatcacttatttaccattagatttaatttgtttaactgatga |
26080413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University