View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10534_2 (Length: 507)
Name: NF10534_2
Description: NF10534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10534_2 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 186 - 346
Target Start/End: Complemental strand, 19397967 - 19397807
Alignment:
| Q |
186 |
gcgaactcaggacaacacaacaaattaacaaaaacctggtatagaaatgtaaaataaataaaacaggaacaaagtgagagttcgattatggtaaaagtga |
285 |
Q |
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| T |
19397967 |
gcgaactcaagacaacacaacaaattaacaaaaatctggtatagaaatgtaaaaaaaatgaaacaggaacaaagtgagagttcgattatggtaaaagtga |
19397868 |
T |
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| Q |
286 |
agatttgttacttgaaaagttaatagtagagtgttatgaaaaatgtaaagtaaattatgaa |
346 |
Q |
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| T |
19397867 |
agagttcttacttgaaaagttaatagtagagtgttatgagaaatgtaaagtaaattatgaa |
19397807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 19398134 - 19398015
Alignment:
| Q |
11 |
cagagatattttaaaacaaaaacatgtgtaaaagtgtttaaacaaatgaaatgtttatataatttttagtataatgagatctgataaacaaattaaacac |
110 |
Q |
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| T |
19398134 |
cagagacattttaaaacaaaaacatgtgtaaaagtgtttaaacaaatgaaatgtttgtatagtttttagtataacgagatctgataaacaaattaaacac |
19398035 |
T |
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| Q |
111 |
acaaacgcatggtaaacaga |
130 |
Q |
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| T |
19398034 |
acaaacgcatggtaaacaga |
19398015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 431 - 507
Target Start/End: Complemental strand, 19397722 - 19397647
Alignment:
| Q |
431 |
tgatgacaaatgttgagaagagtggaaaggtacctgcctttttcttgagctatacaaaagacaaactatttactttt |
507 |
Q |
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| T |
19397722 |
tgatgaaaaatgttgagaagagtgaaaaggtacctgcctttttcttgagctatacaaaagac-aactatttactttt |
19397647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 19398380 - 19398333
Alignment:
| Q |
24 |
aaacaaaaacatgtgtaaaagtgtttaaacaaatgaaatgtttatata |
71 |
Q |
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| T |
19398380 |
aaacagaaacatgtgtaaaagtgtttaaagaaatgaaatgtttatata |
19398333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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