View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10534_3 (Length: 475)
Name: NF10534_3
Description: NF10534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10534_3 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 2123311 - 2123503
Alignment:
| Q |
27 |
acaacgctctctagtacggaggattttccagaactctggccaccaacgacggcgatagaaggtagagagtcccaaagagtgggtaaagaagtggctgctt |
126 |
Q |
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| T |
2123311 |
acaacgctctctagtacggaggattttccagaactctggccaccgacgacggcgatagaagggagagagtcccaaagagtgggtaaagaagtggctgctt |
2123410 |
T |
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| Q |
127 |
caccgtggtcacctaaagcggttcatgctctctggattttgttcaccaaacttattaggttctccatttttgcactgattttgatttgaagtt |
219 |
Q |
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| T |
2123411 |
caccgtggtcacctaaagcggtgcatgctctctggattttgttcaccaatgatattaggttctccatttgcactttgattttgatttgaagtt |
2123503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 2123565 - 2123616
Alignment:
| Q |
267 |
gagtaagtgttgcgtctgagtgatgacaagtagtatataaagcgttgttgttttct |
322 |
Q |
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| T |
2123565 |
gagtaagtgttgcgtctgagtgatgacaagta-tatat---gcgttgttgttttct |
2123616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 42037430 - 42037351
Alignment:
| Q |
27 |
acaacgctctctagtacggaggattttccagaactctggccaccaacgacggcgatagaaggtagagagtcccaaagagt |
106 |
Q |
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| T |
42037430 |
acaacactctccaatacggaggattttccagaactctggccaccaacgacggcgatagcaggaagagaatcccaaagagt |
42037351 |
T |
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