View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10534_4 (Length: 427)
Name: NF10534_4
Description: NF10534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10534_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 43564531 - 43564940
Alignment:
| Q |
13 |
tgagatgaacccttataacactataagcctctttcatcaaatcataaggattttcagaaaaatgaacataagcaatagcattgaaacatgattctttcac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
43564531 |
tgagatgaacccttataacactataagcttctttcatcaaatcataaggattttcagaaaaatgaacataagcaatagcattgaaactagattctaccac |
43564630 |
T |
|
| Q |
113 |
ctttgttgaaccactttcagcacaaatcatgacatgatcatcagaacctggaaaaagtgcagacctaaaacctttttcaattataggaatgatcacagca |
212 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
43564631 |
cttggttgaaccactttcagcacaaatcataacatggtcattagaaccaggaaaaagtgctgacctaaaacctttttcaattataggaatgacaacaaca |
43564730 |
T |
|
| Q |
213 |
taggatttgatttcaggaatatcaaaaagaatccattgagtttccatttgtaaatcagaaccagatttaccaacccattgagtagaccaccatgttttga |
312 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||| |
|
|
| T |
43564731 |
taggatttgatttcaggaatatcaatgagaatccattgagtttccatttgtaaatcagaaccagattttcctacccattgagtggaccaccacgttttga |
43564830 |
T |
|
| Q |
313 |
acctgaaaatactcacaaagtcttttccattgaaactacccaatgaattcatcaatctatcagaaggggtttcattggagaatccaaagaaaccaccttt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
43564831 |
acctgaaaatactcacaaagtcttttccattgaaactacctaatgaattcatcaatctatcagacggggtttcatgagagaatccaaagaaaccaccttt |
43564930 |
T |
|
| Q |
413 |
ttgagaaaaa |
422 |
Q |
| |
|
||||||||| |
|
|
| T |
43564931 |
gtgagaaaaa |
43564940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 36432486 - 36432896
Alignment:
| Q |
13 |
tgagatgaacccttataacactataagcctctttcatcaaatcataaggattttcagaaaaatgaacataagcaatagcattgaaacatgattctttcac |
112 |
Q |
| |
|
||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
36432486 |
tgagatgaaccctcaaagcactataagcttctttcatcaaatcataaggattttcagaaaaatgaacataagcaatagcattgaaactcaatgctttcac |
36432585 |
T |
|
| Q |
113 |
ctttgttgaaccactttcagcacaaatcatgacatgatcatcagaacctggaaaaagtgcagacctaaaacctttttcaattataggaatgatcacagca |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||| ||||||||||| ||| |||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
36432586 |
ctttgttgaaccactctcagcacaaatcataaaatggtcatcagaaccaggatgaagtgcagacctaaaaccgttttcaatgataggaatgatcacagca |
36432685 |
T |
|
| Q |
213 |
taggatttgatttcaggaatatcaaaaagaatccattgagtttccatttgtaaatcagaaccagatttaccaacccattgagtagaccaccatgttttga |
312 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | || | |||||||||||||||||| ||||||| |
|
|
| T |
36432686 |
taggatctgatttcaggaatctcaaaaagaatccattgagtttccatttgcaaatcagaaccagatcttcctatccattgagtagaccaccaagttttga |
36432785 |
T |
|
| Q |
313 |
acctgaaaatactcacaaagtcttttccattgaaactacccaatgaattcatcaatctatcagaaggggtttcattggagaatccaaagaaaccaccttt |
412 |
Q |
| |
|
|||| |||||||| ||||||| | | |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36432786 |
acctaaaaatactgacaaagtttctaccattgaaactacctaatgaattcatgaatctatcagatggggtttcattggagaatccaaagaaaccaccttt |
36432885 |
T |
|
| Q |
413 |
ttgagaaaaag |
423 |
Q |
| |
|
|||||||||| |
|
|
| T |
36432886 |
gtgagaaaaag |
36432896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 425
Target Start/End: Complemental strand, 43974071 - 43973659
Alignment:
| Q |
13 |
tgagatgaacccttataacactataagcctctttcatcaaatcataaggattttcagaaaaatgaacataagcaatagcattgaaacatgattctttcac |
112 |
Q |
| |
|
||||||||||||| ||| |||||||||| || ||||||||| ||||||||||||| | ||||||||||||||| |||| ||||| ||| ||||||| |
|
|
| T |
43974071 |
tgagatgaaccctaatagcactataagcttcattcatcaaagtataaggattttcactcacatgaacataagcaatcgcatcgaaactcgatgctttcac |
43973972 |
T |
|
| Q |
113 |
ctttgttgaaccactttcagcacaaatcatgacatgatcatcagaacctggaaaaagtgcagacctaaaacctttttcaattataggaatgatcacagca |
212 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||||| ||||||||| | |||||||| ||| || |
|
|
| T |
43973971 |
ttgtgttgacccactttcagcacaaatcatgacatggtcatcagaaccaggatgaagcgcagacctaaaacttttttcaatgacaggaatgacaacaaca |
43973872 |
T |
|
| Q |
213 |
taggatttgatttcaggaatatcaaaaagaatccattgagtttccatttgtaaatcagaaccagatttaccaacccattgagtagaccaccatgttttga |
312 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || || | ||||||| |||||||||| ||||||| |
|
|
| T |
43973871 |
taggatttgatttcaggaatatcaatgagaatccattgagtttccatttgtaaatcagatccagaatttcctatccattgactagaccaccaagttttga |
43973772 |
T |
|
| Q |
313 |
acctgaaaatactcacaaagtcttttccattgaaactacccaatgaattcatcaatctatcagaaggggtttcattggagaatccaaagaaaccaccttt |
412 |
Q |
| |
|
|||| |||| ||| |||||||||||||||| |||||||| || || |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43973771 |
acctaaaaacactgacaaagtcttttccatgaaaactacctaaagagttcatcaatctatcagaaggggtttcatgggagaatccaaagaaaccaccttt |
43973672 |
T |
|
| Q |
413 |
ttgagaaaaagca |
425 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43973671 |
gtgagaaaaagca |
43973659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 186 - 425
Target Start/End: Complemental strand, 8952456 - 8952218
Alignment:
| Q |
186 |
ttttcaattataggaatgatcacagcataggatttgatttcaggaatatcaaaaagaatccattgagtttccatttgtaaatcagaaccagatttaccaa |
285 |
Q |
| |
|
|||||| | |||||||||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| || || | |
|
|
| T |
8952456 |
ttttcattgataggaatgacaacaacataggatttgatttcaggaatatcaatgagaatccattgattttccatttgtaaatcagatccagaatttccta |
8952357 |
T |
|
| Q |
286 |
cccattgagtagaccaccatgttttgaacctgaaaatactcacaaagtcttttccattgaaactacccaatgaattcatcaatctatcagaaggggtttc |
385 |
Q |
| |
|
||||||| |||||||||| ||||||| ||| |||| ||| ||||||| ||||||||| |||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
8952356 |
tccattgactagaccaccaagttttgagcctaaaaacactaacaaagt-ttttccattaaaactacctaaagagttcatcaatctatcagaaggggtttc |
8952258 |
T |
|
| Q |
386 |
attggagaatccaaagaaaccacctttttgagaaaaagca |
425 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8952257 |
atgggagaatccaaagaaaccacctttgcgagaaaaagca |
8952218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 8952492 - 8952460
Alignment:
| Q |
116 |
tgttgaaccactttcagcacaaatcatgacatg |
148 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
8952492 |
tgttgaactactttcagcacaaatcatgacatg |
8952460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University