View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10534_6 (Length: 412)

Name: NF10534_6
Description: NF10534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10534_6
NF10534_6
[»] chr4 (4 HSPs)
chr4 (24-283)||(42998479-42998738)
chr4 (24-283)||(42999072-42999331)
chr4 (186-283)||(50232993-50233090)
chr4 (173-283)||(43605582-43605691)
[»] chr5 (4 HSPs)
chr5 (62-282)||(21654547-21654767)
chr5 (147-283)||(29632558-29632694)
chr5 (186-282)||(21012013-21012109)
chr5 (173-214)||(10641659-10641700)
[»] chr2 (6 HSPs)
chr2 (281-397)||(45414725-45414841)
chr2 (146-282)||(13067119-13067255)
chr2 (181-281)||(15930901-15931001)
chr2 (186-283)||(40915477-40915574)
chr2 (230-283)||(4814602-4814654)
chr2 (230-283)||(9059899-9059951)
[»] chr8 (1 HSPs)
chr8 (173-280)||(5242660-5242766)
[»] chr1 (3 HSPs)
chr1 (146-280)||(48538558-48538692)
chr1 (173-281)||(39179965-39180073)
chr1 (186-283)||(24535404-24535501)
[»] scaffold0421 (1 HSPs)
scaffold0421 (181-282)||(4569-4670)
[»] chr7 (3 HSPs)
chr7 (173-283)||(18478629-18478739)
chr7 (193-283)||(18418404-18418494)
chr7 (229-283)||(23485479-23485532)
[»] chr6 (4 HSPs)
chr6 (173-284)||(7015463-7015574)
chr6 (173-279)||(5169674-5169780)
chr6 (253-281)||(907778-907806)
chr6 (230-278)||(8609491-8609539)
[»] chr3 (11 HSPs)
chr3 (186-282)||(32793231-32793327)
chr3 (186-282)||(50833604-50833700)
chr3 (186-282)||(50842153-50842249)
chr3 (230-283)||(50833759-50833812)
chr3 (230-283)||(50833824-50833877)
chr3 (230-283)||(50841976-50842029)
chr3 (230-283)||(50842041-50842094)
chr3 (165-277)||(16980972-16981083)
chr3 (173-282)||(40166578-40166686)
chr3 (230-279)||(50717211-50717259)
chr3 (230-279)||(50795589-50795637)
[»] scaffold0246 (1 HSPs)
scaffold0246 (228-278)||(11383-11433)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 24 - 283
Target Start/End: Original strand, 42998479 - 42998738
Alignment:
Q  24 ttctgagtggagagctttctgttttccatgcggcatatcaagagttgaaatttaatgcgattcattatataaaaaatttaacaaaatagcacgttatata 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||    
T  42998479 ttctgagtggagagctttctgttttccatgcggcatatcaagagttgaaatttaatgcgattcattgtatcaaaaatttaacaaaatggcacgttatata 42998578  T
Q  124 atgttctgattgctgacatcaagatttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagattt 223  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42998579 atgttctgattgctgacatcaagatttttcaaattcatgtggtggaatatggagggaagtttttagggttaacactaacaacaattaatgcataagattt 42998678  T
Q  224 aaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42998679 agagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagggata 42998738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 24 - 283
Target Start/End: Original strand, 42999072 - 42999331
Alignment:
Q  24 ttctgagtggagagctttctgttttccatgcggcatatcaagagttgaaatttaatgcgattcattatataaaaaatttaacaaaatagcacgttatata 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||    
T  42999072 ttctgagtggagagctttctgttttccatgcggcatatcaagagttgaaatttaatgcgattcattgtatcaaaaatttaacaaaatggcacgttatata 42999171  T
Q  124 atgttctgattgctgacatcaagatttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagattt 223  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  42999172 atgttctgattgctgacatcaagatttttcaaattcatgtggtggaatatggagggaagtttttagggttaacactaacagcaattaatgcataagattt 42999271  T
Q  224 aaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42999272 agagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagggata 42999331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 283
Target Start/End: Original strand, 50232993 - 50233090
Alignment:
Q  186 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    ||||||||||||||||||||||||||| ||  |  || |    ||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||    
T  50232993 ttagggttaacactaacaacaattaatacaacattttgagcgagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggata 50233090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 43605582 - 43605691
Alignment:
Q  173 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 272  Q
    ||||||||| ||||||||| || |||| | | |||||||||||  |||||| ||   |||||||||| ||||| |||||||| |||||||||||||||||    
T  43605582 tagagggaaatttttagggcta-cacttagagcaattaatgcagcagatttgaagccaaatttttagggttaattgtttgcaaacctaataacattaagg 43605680  T
Q  273 agtaagggata 283  Q
    || ||| ||||    
T  43605681 aggaagagata 43605691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 62 - 282
Target Start/End: Complemental strand, 21654767 - 21654547
Alignment:
Q  62 caagagttgaaatttaatgcgattcattatataaaaaatttaacaaaatagcacgttatataatgttctgattgctgacatcaagatttttcaaattcat 161  Q
    |||||| ||||||||||||| ||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21654767 caagaggtgaaatttaatgcaattcattgtatcacaaatttaacaaaatggcacgttatataatgttctgattgctgacatcaagatttttcaaattcat 21654668  T
Q  162 ctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaa 261  Q
     ||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||| | |||||  | ||| ||| |||||||||| ||||||    
T  21654667 gtggtggaatatggagggaagtttttagggttaacactaacaataattaatgcatcagatttagagggaaaaatgtagggtttagtgtttgcacacctaa 21654568  T
Q  262 taacattaaggagtaagggat 282  Q
    |||||||||||||||||||||    
T  21654567 taacattaaggagtaagggat 21654547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 147 - 283
Target Start/End: Original strand, 29632558 - 29632694
Alignment:
Q  147 atttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaag 246  Q
    |||||| |||||||  | || |||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||||| ||||||    
T  29632558 atttttgaaattcaaatagtagaatttagaggaaattttttagggtcaacactaacaacaattaatgcattagatttagagggaaatttttagggttaag 29632657  T
Q  247 tgtttgcagacctaataacattaaggagtaagggata 283  Q
    |||||||| ||||||||||||||||||||||||||||    
T  29632658 tgtttgcaaacctaataacattaaggagtaagggata 29632694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 21012013 - 21012109
Alignment:
Q  186 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 282  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  21012013 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 21012109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 10641659 - 10641700
Alignment:
Q  173 tagagggaattttttagggttaacactaacaacaattaatgc 214  Q
    ||||||||||||| |||||||| ||||||||||| |||||||    
T  10641659 tagagggaattttctagggttatcactaacaacatttaatgc 10641700  T

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Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 281 - 397
Target Start/End: Complemental strand, 45414841 - 45414725
Alignment:
Q  281 atacattcgtatgtcacgatgaaagcaccactgctccaaatgacacataatatatgcggtgtatgagttaaaagaggaaggaccacaatacatagtaatc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45414841 atacattcgtatgtcacgatgaaagcaccactgctccaaatgacacataatatatgcggtgtatgagttaaaagagaaaggaccacaatacatagtaatc 45414742  T
Q  381 aagaatctaagctggat 397  Q
    |||||||||||||||||    
T  45414741 aagaatctaagctggat 45414725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 146 - 282
Target Start/End: Original strand, 13067119 - 13067255
Alignment:
Q  146 gatttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaa 245  Q
    ||||||| |||||||| ||||||||||| ||  ||||||||||||||||| ||||||  ||||||||| |  || |||| | |||||||||||| |||||    
T  13067119 gatttttgaaattcatttggtggaatattgaaagaattttttagggttaatactaacggcaattaatgaaccagttttagagggaaatttttagggttaa 13067218  T
Q  246 gtgtttgcagacctaataacattaaggagtaagggat 282  Q
    ||| ||||  |||||||||||||||||||||||||||    
T  13067219 gtgattgctaacctaataacattaaggagtaagggat 13067255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 15930901 - 15931001
Alignment:
Q  181 attttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaaggg 280  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| | |||||||||||| ||||| |||||||| |||||||||||||||||| ||||||    
T  15930901 attttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaaatgtttgcaaacctaataacattaaggaataaggg 15931000  T
Q  281 a 281  Q
    |    
T  15931001 a 15931001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 283
Target Start/End: Original strand, 40915477 - 40915574
Alignment:
Q  186 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||| ||||||| |||||||| ||||  |||||| |||||||||||||||||||||    
T  40915477 ttagggttaacactaacaacaattaatacaacattttgagagggaattttttagggttaagtgattgctaacctaacaacattaaggagtaagggata 40915574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 4814654 - 4814602
Alignment:
Q  230 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    |||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  4814654 aaatctttagggttaagtgtttgca-acctaataaaattaaggagtaagggata 4814602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 9059899 - 9059951
Alignment:
Q  230 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    |||||||||| |||||||  ||||| ||||||||| ||||||||||||||||||    
T  9059899 aaatttttagggttaagttgttgca-acctaataagattaaggagtaagggata 9059951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 173 - 280
Target Start/End: Original strand, 5242660 - 5242766
Alignment:
Q  173 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 272  Q
    ||||||||||||||||||| || || |||||||||||||||||  ||||||| | |||||||||||| |||||||||||||| |||||||||||||||||    
T  5242660 tagagggaattttttagggcta-caataacaacaattaatgcaatagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaagg 5242758  T
Q  273 agtaaggg 280  Q
    ||||||||    
T  5242759 agtaaggg 5242766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 146 - 280
Target Start/End: Complemental strand, 48538692 - 48538558
Alignment:
Q  146 gatttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaa 245  Q
    ||||||| |||||||| ||||||||||| ||  ||||||||||||||||||||||||  ||||||||| |  || |||| | |||||||||||| |||||    
T  48538692 gatttttgaaattcatttggtggaatattgaaagaattttttagggttaacactaacggcaattaatgaaacagttttagagggaaatttttagggttaa 48538593  T
Q  246 gtgtttgcagacctaataacattaaggagtaaggg 280  Q
    ||| ||||  |||||||||||||||||||||||||    
T  48538592 gtgattgctaacctaataacattaaggagtaaggg 48538558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 39180073 - 39179965
Alignment:
Q  173 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 272  Q
    |||||||||||||||||||||| ||| ||||||| |||||||| |||||||| | ||||||| |||| ||| |||| ||||| |||||||||||||||||    
T  39180073 tagagggaattttttagggttatcaccaacaacatttaatgcaaaagatttagagggaaattattagggtttagtggttgcaaacctaataacattaagg 39179974  T
Q  273 agtaaggga 281  Q
    |||||||||    
T  39179973 agtaaggga 39179965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 283
Target Start/End: Original strand, 24535404 - 24535501
Alignment:
Q  186 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||| | |||||||| ||||  ||||||||||||||||||||||||||||    
T  24535404 ttagggttaacactaacaacaattaatacaacattttgagagggaaattttttgggttaagtgattgctaacctaataacattaaggagtaagggata 24535501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 181 - 282
Target Start/End: Complemental strand, 4670 - 4569
Alignment:
Q  181 attttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaaggg 280  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  4670 attttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagagttaagtgtttgcaaacctaataacattaaggaataaggg 4571  T
Q  281 at 282  Q
    ||    
T  4570 at 4569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 283
Target Start/End: Complemental strand, 18478739 - 18478629
Alignment:
Q  173 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 272  Q
    ||||||||||||| |||||||| ||| ||||||| ||||||||  ||||||| | ||||||| |||| ||| |||  ||||| |||||||||||||||||    
T  18478739 tagagggaattttctagggttatcaccaacaacatttaatgcaatagatttagagggaaattattagggtttagtagttgcaaacctaataacattaagg 18478640  T
Q  273 agtaagggata 283  Q
    |||||||||||    
T  18478639 agtaagggata 18478629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 283
Target Start/End: Original strand, 18418404 - 18418494
Alignment:
Q  193 taacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    |||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||| |||||||||||||||||||||    
T  18418404 taacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaacaacattaaggagtaagggata 18418494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 23485532 - 23485479
Alignment:
Q  229 gaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  23485532 gaaatttttagggttaagtgtttgca-acctaataaaattaaggagtaagggata 23485479  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 284
Target Start/End: Complemental strand, 7015574 - 7015463
Alignment:
Q  173 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 272  Q
    |||||| ||||||||||| ||| ||||||||||| ||||| ||  ||||||| | ||||||  |||| ||| |||| ||||| |||||||||||||||||    
T  7015574 tagaggaaattttttaggattatcactaacaacatttaatacaatagatttagagggaaataattagggtttagtggttgcaaacctaataacattaagg 7015475  T
Q  273 agtaagggatac 284  Q
    ||||||||||||    
T  7015474 agtaagggatac 7015463  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 279
Target Start/End: Complemental strand, 5169780 - 5169674
Alignment:
Q  173 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 272  Q
    |||||| |||||| |||||||| |||| |||||  ||||||||  ||||||| | ||||||| |||| ||| |||| ||||| ||||||||| |||||||    
T  5169780 tagaggaaattttctagggttatcactgacaacgtttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaagg 5169681  T
Q  273 agtaagg 279  Q
    |||||||    
T  5169680 agtaagg 5169674  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 907778 - 907806
Alignment:
Q  253 cagacctaataacattaaggagtaaggga 281  Q
    |||||||||||||||||||||||||||||    
T  907778 cagacctaataacattaaggagtaaggga 907806  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 8609491 - 8609539
Alignment:
Q  230 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaag 278  Q
    |||||| ||| ||||| ||| |||||||||||||| |||||||||||||    
T  8609491 aaatttctagggttaattgtatgcagacctaataagattaaggagtaag 8609539  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 32793231 - 32793327
Alignment:
Q  186 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 282  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  32793231 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 32793327  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 50833604 - 50833700
Alignment:
Q  186 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 282  Q
    ||||||||||||||||||||||||||| ||  |  || | |  ||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  50833604 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50833700  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 50842249 - 50842153
Alignment:
Q  186 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 282  Q
    ||||||||||||||||||||||||||| ||  |  || | |  ||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  50842249 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50842153  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 50833812 - 50833759
Alignment:
Q  230 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50833812 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggata 50833759  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 50833877 - 50833824
Alignment:
Q  230 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50833877 aaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggata 50833824  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 50841976 - 50842029
Alignment:
Q  230 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50841976 aaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggata 50842029  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 50842041 - 50842094
Alignment:
Q  230 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 283  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50842041 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggata 50842094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 16981083 - 16980972
Alignment:
Q  165 gtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataa 264  Q
    |||||||| |||| |||||||| ||||||||||||||||  | ||||||||| ||||||| |   || ||||||| ||||||   ||||| |||||||||    
T  16981083 gtggaatagagagagaattttt-agggttaacactaacagaagttaatgcatgagatttagagaaaattttttagggttaagcaattgcaaacctaataa 16980985  T
Q  265 cattaaggagtaa 277  Q
    |||||||||||||    
T  16980984 cattaaggagtaa 16980972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 40166578 - 40166686
Alignment:
Q  173 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 272  Q
    ||||||||| ||||||||| || || | |||||||||||||||  ||||||  |   |||||| ||| ||| | | ||||||||| ||||||||||||||    
T  40166578 tagagggaaatttttagggcta-caattacaacaattaatgcagcagatttggagccaaatttctagggttgattatttgcagacttaataacattaagg 40166676  T
Q  273 agtaagggat 282  Q
    ||||||||||    
T  40166677 agtaagggat 40166686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 50717259 - 50717211
Alignment:
Q  230 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 279  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  50717259 aaatctttagagttaagtgtttgca-acctaataaaattaaggagtaagg 50717211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 50795589 - 50795637
Alignment:
Q  230 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 279  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  50795589 aaatctttagagttaagtgtttgca-acctaataaaattaaggagtaagg 50795637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 11433 - 11383
Alignment:
Q  228 ggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaag 278  Q
    |||||||||||  |||||||||||| | |||||||||||||||||||||||    
T  11433 ggaaatttttaaggttaagtgtttgaaaacctaataacattaaggagtaag 11383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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