View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10534_9 (Length: 370)
Name: NF10534_9
Description: NF10534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10534_9 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 42960824 - 42961139
Alignment:
| Q |
1 |
gtatctaagaatgaaattgactttgacaagaagtttcaagagtggagtagctataggatgggatttggcaattttttactggcaaaattgcactgagttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960824 |
gtatctaagaatgaaattgactttgacaagaagtttcaagagtggag-agttagaggatgggatttggcaattttttactggcaaaattgcactgagttg |
42960922 |
T |
|
| Q |
101 |
gggcaaactgcattttttcaagttattgatcacttggctgctcaatcgaagagattatcaggcaaatcctccaagaaggtgagttgcagcaacctctaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960923 |
gggcaaactgcattttttcaagttattgatcacttggctgctcaatccaagagattatcaggcaaatcctccaagaaggtgagttgcagcaacctctaac |
42961022 |
T |
|
| Q |
201 |
cttctctaaattgactaatgaagcaaagtctcctatgagattaagtgtgtcaccgtgtcaacactccagacacgcgttggtgttctacaccgacacatat |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
42961023 |
cttctctaaattgactaatgaagcgaagtctcctatgagattaagtgtgtcaccgtgtcaacactccagacac---atggtgttcgacaccgacacatat |
42961119 |
T |
|
| Q |
301 |
atttagattcaattacttaa |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
42961120 |
atttagattcaattacttaa |
42961139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 57 - 296
Target Start/End: Original strand, 30343088 - 30343326
Alignment:
| Q |
57 |
gatgggatttggcaattttttactggcaaaattgcactgagttggggcaaactgcattttttcaagttattgatcacttggctgctcaatcgaagagatt |
156 |
Q |
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| T |
30343088 |
gatgagatttcgcaattttttacttgcaaaattgcactgagttggggaaaagtgcattttt-caggttattgatcagttggctgctcaatcctagatatt |
30343186 |
T |
|
| Q |
157 |
atcaggcaaatcctccaagaaggtgagttgcagcaacctct-aaccttctctaaattgactaatgaagcaaagtctcctatgagattaagtgtgtcaccg |
255 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||| |||| ||||||| ||||||| ||| |
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| T |
30343187 |
atcaggcaaatcctccaagaaggtgagttgcagcaatctctaaaccttttctaaattgactaatgacgcaaagtcacctaagagattaggtgtgtctccg |
30343286 |
T |
|
| Q |
256 |
tgt-caacactccagacacgcgttggtgttctacaccgacac |
296 |
Q |
| |
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||| ||||||| | |||||||||||||||| ||||| |||| |
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| T |
30343287 |
tgtccaacacttc--acacgcgttggtgttcgacaccaacac |
30343326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 57 - 296
Target Start/End: Complemental strand, 18986697 - 18986459
Alignment:
| Q |
57 |
gatgggatttggcaattttttactggcaaaattgcactgagttggggcaaactgcattttttcaagttattgatcacttggctgctcaatcgaagagatt |
156 |
Q |
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|||| ||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||| | | ||| |
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| T |
18986697 |
gatgagatttcgcaattttttacttgcaaaattgcactgagttggggaaaagtgcattttt-caggttattgatcacttggctgctcaatcctatatatt |
18986599 |
T |
|
| Q |
157 |
atcaggcaaatcctccaagaaggtgagttgcagcaacctct-aaccttctctaaattgactaatgaagcaaagtctcctatgagattaagtgtgtcaccg |
255 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||| |||||| ||||||||||||||||| |||||||| | || ||||||| ||||||| || |
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| T |
18986598 |
atcaggcaaatcctccaagaaggtgagttgcaaaaatctctaaaccttttctaaattgactaatgacgcaaagtcacataagagattaggtgtgtcttcg |
18986499 |
T |
|
| Q |
256 |
tgt-caacactccagacacgcgttggtgttctacaccgacac |
296 |
Q |
| |
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||| ||||||| | |||||||||||||||| ||||| |||| |
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| T |
18986498 |
tgtccaacacttc--acacgcgttggtgttcgacaccaacac |
18986459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 57 - 296
Target Start/End: Original strand, 23918826 - 23919064
Alignment:
| Q |
57 |
gatgggatttggcaattttttactggcaaaattgcactgagttggggcaaactgcattttttcaagttattgatcacttggctgctcaatcgaagagatt |
156 |
Q |
| |
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|||| ||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||| | | ||| |
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| T |
23918826 |
gatgagatttcgcaattttttacttgcaaaattgcactgagttggggaaaagtgcattttt-caggttattgatcacttggctgctcaatcctatatatt |
23918924 |
T |
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| Q |
157 |
atcaggcaaatcctccaagaaggtgagttgcagcaacctct-aaccttctctaaattgactaatgaagcaaagtctcctatgagattaagtgtgtcaccg |
255 |
Q |
| |
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||||||||||||| |||||||||||||||||| || |||| |||||| ||||||||||||||||| |||||||| ||| ||||||| ||||||| || |
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| T |
23918925 |
atcaggcaaatcccccaagaaggtgagttgcaaaaatctctaaaccttttctaaattgactaatgacgcaaagtcacctgagagattaggtgtgtcttcg |
23919024 |
T |
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| Q |
256 |
tgt-caacactccagacacgcgttggtgttctacaccgacac |
296 |
Q |
| |
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||| ||||||| | |||||||||||||||| ||||| |||| |
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| T |
23919025 |
tgtccaacacttc--acacgcgttggtgttcgacaccaacac |
23919064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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