View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10534_low_1 (Length: 349)
Name: NF10534_low_1
Description: NF10534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10534_low_1 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 7599317 - 7598992
Alignment:
| Q |
20 |
gaagctagtaaatttcagtgcttgaatcatgccatgcaaactgaacttgtagctttggacaaaattaatgcttgaaaagttgttgatcaccctcttaatt |
119 |
Q |
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| T |
7599317 |
gaagctagtaaatttcagtgcttgaatcatgccatgcaaactgaacttgtagctttggacaaaattaatgcttgaaaagttgttgatcaccctcttaatt |
7599218 |
T |
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| Q |
120 |
tcaaactaagaggttagattacctcttgatatttgcattaacttgatgtcaataatttttcttacgtgatgaatcaataagaatatgtttacgtgattat |
219 |
Q |
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| T |
7599217 |
tcaaactaagatgttagattacctcttgatatttgcattaacttgatgtcaataatttttcttacgtgatgaatcaataagaatatgtttacgtgattat |
7599118 |
T |
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| Q |
220 |
acatgtaggagttattacaccgaccaagcaatcaagtgtgtaaatttatcggtcatcaatgagtatttagccttgcaaagtggtcattgttgattcacac |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
7599117 |
acatgtaggagttattacaccgaccaagcaatcaagtgtgtaaatttatcggtcatcaatgagtatttagccttgcaaagtggtcatcgctgattcacac |
7599018 |
T |
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| Q |
320 |
gggatttcacgtgccctatgctactc |
345 |
Q |
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| T |
7599017 |
gggattccacgtgccccatgctactc |
7598992 |
T |
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Target: scaffold0002 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 184474 - 184553
Alignment:
| Q |
266 |
tatcggtcatcaatgagtatttagccttgcaaagtggtcattgttgattcacacgggatttcacgtgccctatgctactc |
345 |
Q |
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| T |
184474 |
tatcggtcacccaggagtatttagccttgcaaggtggtccttgctgattcacacgggattccacgtgccccatgctactc |
184553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 493042 - 492963
Alignment:
| Q |
266 |
tatcggtcatcaatgagtatttagccttgcaaagtggtcattgttgattcacacgggatttcacgtgccctatgctactc |
345 |
Q |
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| T |
493042 |
tatcggtcacccaggagtatttagccttgcaaggtggtccttgctgattcacacgggattccacgtgccccatgctactc |
492963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 18190689 - 18190624
Alignment:
| Q |
280 |
gagtatttagccttgcaaagtggtcattgttgattcacacgggatttcacgtgccctatgctactc |
345 |
Q |
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| T |
18190689 |
gagtatttagccttgcaaggtggtccttgctgattcacacgggattccacgtgccccatgctactc |
18190624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 34656310 - 34656231
Alignment:
| Q |
266 |
tatcggtcatcaatgagtatttagccttgcaaagtggtcattgttgattcacacgggatttcacgtgccctatgctactc |
345 |
Q |
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| T |
34656310 |
tatcggtcacccaggagtatttagccttgcaaggtggtccttgctgattcacacggcattccacgtgccccatgctactc |
34656231 |
T |
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