View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10535_low_5 (Length: 247)
Name: NF10535_low_5
Description: NF10535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10535_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 51214811 - 51214582
Alignment:
| Q |
1 |
aaagaaattaaatgtttaatgctaaaagaatgtgatgagctcagagttcaaccaaagagcactatatctgaaatggcctccgagttgggaccgtaactta |
100 |
Q |
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| T |
51214811 |
aaagaaattaaatgtttaatgctaaaagaatgtgatgagctcagagttcaaccaaagagcactatatctgaaatggcctccgagttgggaccgtaactta |
51214712 |
T |
|
| Q |
101 |
cttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagcataaaaactgattgcatagacacaaaacagaaagaagattgctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214711 |
cttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagcataaaaactgattgcatagacacaaaacagaaagaagattgctaa |
51214612 |
T |
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| Q |
201 |
cccaaaaccagttccactgactaaaccctg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
51214611 |
cccaaaaccagttccactgactaaaccctg |
51214582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 49735391 - 49735527
Alignment:
| Q |
94 |
taacttacttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagcataaaaactgattgcatagacacaaaacagaaagaaga |
193 |
Q |
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||||||||||||||||| |||| || || ||||||||||||| || |||||| || ||||||||||||||| |||||| ||||| |||| |||||||| |
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| T |
49735391 |
taacttacttgaaaaacatctgatattgaggttttgccattcttaacaagttgtgctccagcataaaaactgcatgcataaacacagaacataaagaaga |
49735490 |
T |
|
| Q |
194 |
ttgctaacccaaaaccagttccactgactaaaccctg |
230 |
Q |
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||| ||| ||||||||| |||||| |||| |||||| |
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| T |
49735491 |
ttgataagccaaaaccaactccactaactataccctg |
49735527 |
T |
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