View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10536_2 (Length: 405)
Name: NF10536_2
Description: NF10536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10536_2 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 13184094 - 13184501
Alignment:
| Q |
1 |
atattgctgatccgattgacatgtgtcaaagtttttcaacagccatcaaaattcattattggttgattagtttcctggatctgttgcccatacttacttg |
100 |
Q |
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| T |
13184094 |
atattgctgatccgattgacatgtgtcaaagtttttcaagagccattaaaattcattattggttgattagtttcctggatctgttgcccatacttacttg |
13184193 |
T |
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| Q |
101 |
ttttgcatctctaaaatggttgaataaatcacaacattgttattcagattttggtggcagtttattttagctatcttaaaccattttttgtnnnnnnnnn |
200 |
Q |
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| T |
13184194 |
ttttgcatctctaaaatggttgaataaatcacaacatttttattcagattttggtggaagtttgttttagctattttaaaccattttttgtaaaaaaaaa |
13184293 |
T |
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| Q |
201 |
nnntaa---cttttttataatatttcatagaaaactgtaaaccattaaattctttaattctcatgaaaatgttaatttaaatttctacacaacaaatcca |
297 |
Q |
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| T |
13184294 |
aaaaaaaaacatttttataatatttcatagaaaactgtaaaccattaaattctttaattctcatgaaaattttaatttcaatttctacacaacaaatcca |
13184393 |
T |
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| Q |
298 |
attatttgttttcaattataaaaatcaaattttaaagtcgatattctcatgaaaatgttcaaagcatatcttaacaaaatgttatcagcatatgtgtcgc |
397 |
Q |
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| T |
13184394 |
attatttgttttcaattataaaaatcaaattttaaagtggatattctcatgaaaatgttcaaagcatatcttaacaaaatgttatcagcatatgtgtcgc |
13184493 |
T |
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| Q |
398 |
tctcttgg |
405 |
Q |
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| T |
13184494 |
tctcttgg |
13184501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 13156335 - 13156632
Alignment:
| Q |
21 |
atgtgtcaaagtttttcaacagccatcaaaattcattattggttgattagtttc-ctggatctgttgcccatacttacttgttttgcatctctaaaatgg |
119 |
Q |
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| T |
13156335 |
atgtgtcaaagtgtttcaagagccttcaaaattcattattggttgattattttttctggatctgctgccca--cgtacttgtgttgcatctctgaaatag |
13156432 |
T |
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| Q |
120 |
ttgaataaatcacaacattgttattcagattttggtggcagtttattttagctatcttaaaccattttttgtnnnnnnnnnnnntaacttttttataata |
219 |
Q |
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| T |
13156433 |
ttgaataaatcacaacttttttattcagattttgggggcagtttgttttcgatgttttaaactattttt--ttaacaaaaaaaaaaaaaaacttataata |
13156530 |
T |
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| Q |
220 |
tttcatagaaaactgtaaaccattaaattctttaattctcatgaaaatgttaatttaaatttctacacaacaaatccaattatttgttttcaattataaa |
319 |
Q |
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| T |
13156531 |
tttcattgaaaactgtaaaccattaaattctatgattctcaagaaaatgtgaatttcaagttttactaaataaattcaattatttatttttaactataaa |
13156630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 13161191 - 13161488
Alignment:
| Q |
21 |
atgtgtcaaagtttttcaacagccatcaaaattcattattggttgattagtttc-ctggatctgttgcccatacttacttgttttgcatctctaaaatgg |
119 |
Q |
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|||||||||||| |||||| |||| |||||||||||||||||||||||| ||| ||||||||| |||||| | ||||||| |||||||||| |||| | |
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| T |
13161191 |
atgtgtcaaagtgtttcaagagccttcaaaattcattattggttgattattttttctggatctgctgccca--cgtacttgtgttgcatctctgaaatag |
13161288 |
T |
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| Q |
120 |
ttgaataaatcacaacattgttattcagattttggtggcagtttattttagctatcttaaaccattttttgtnnnnnnnnnnnntaacttttttataata |
219 |
Q |
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| T |
13161289 |
ttgaataaatcacaacttttttattcagattttgggggcagtttgttttcgatgttttaaactattttt--ttaacaaaaaaaaaaaaaaacttataata |
13161386 |
T |
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| Q |
220 |
tttcatagaaaactgtaaaccattaaattctttaattctcatgaaaatgttaatttaaatttctacacaacaaatccaattatttgttttcaattataaa |
319 |
Q |
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|||||| |||||||||||||||||||||||| | ||||||| |||||||| ||||| || || ||| || |||| ||||||||| |||| || |||||| |
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| T |
13161387 |
tttcattgaaaactgtaaaccattaaattctatgattctcaagaaaatgtgaatttcaagttttactaaataaattcaattatttatttttaactataaa |
13161486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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