View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10536_5 (Length: 380)
Name: NF10536_5
Description: NF10536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10536_5 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 31 - 368
Target Start/End: Complemental strand, 52971068 - 52970727
Alignment:
| Q |
31 |
atctgtttgttgttcccttatttaagaaggatattcatataatataacataagcttagtagatgtttgcatccacggtgatttttggcaaaattacgtga |
130 |
Q |
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| T |
52971068 |
atctgtttgttgttcccttatttaagaaggatattcatataatataacataagcttagttgatgtttgcatccatggtgatttttggcaaaattacgtga |
52970969 |
T |
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| Q |
131 |
tttagttgaatatnnnnnnn-tgttaattttgctcaatccaaccattaaaatgaattcatatgacaaatataa---accaacagatttctcaagaaaaac |
226 |
Q |
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| T |
52970968 |
tttagttgaatataaaaaaaatgttaattttgctcaatccaaccattaaaatgaattcatatgacaaatataataaaccaacagatttctcaagaaaaac |
52970869 |
T |
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| Q |
227 |
aaagaagcaagtacatgtttgacataagacacaatatttcacataactttaattaataccgttcaatctatgttaagattattttaatcaatattctttg |
326 |
Q |
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| T |
52970868 |
aaagaagcaagtacatgtttgacataagacacgatatttcacataactttaattaataccgttcaatctatgttaagattattttaatcaatattctttg |
52970769 |
T |
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| Q |
327 |
ataagtagcacggtctcatgatcaaacagcttttataatatt |
368 |
Q |
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| T |
52970768 |
ataagtagcactgtctcatgatcaaacagcttttataatatt |
52970727 |
T |
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