View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10537_low_1 (Length: 418)
Name: NF10537_low_1
Description: NF10537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10537_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 55060870 - 55061273
Alignment:
| Q |
1 |
aaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaaggatctctgacaacaacaagtttatctttagtaacaaacacaatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
55060870 |
aaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaaggatctctgacaacaaaaagtttatcttcagtaacaaacacaatt |
55060969 |
T |
|
| Q |
101 |
gaataagcacctttaactttttcacacgcttcaacaattatcgctataaaa-ggtctatgatttgaagttgcaataagatgaagcaaaacttcagtatca |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55060970 |
gaataagcacctttaactttttcacacgcttcaacaattctcgctataaaaaggtctatgatttgaagttgcaataagatgaagcaaaacttcagtatca |
55061069 |
T |
|
| Q |
200 |
gaagtagtgttgaaaattgaaccagattcttcaagttcatttctcaaggaacggtaattgacgaagttaccattatgagcaacaccaacggaaccaaaac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55061070 |
gaagtagtgttgaaaattgaaccagattcttcaagttcatttctcaaggaacggtaattgacgaagttaccattatgagcaacaccaacggaaccaaaac |
55061169 |
T |
|
| Q |
300 |
ggtaacctgcaacaaaaggttgatcgtttttgagcatggattggcctgcagttgaataacgaacgtgaccaacggctaagtttccagataattgacgaag |
399 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||| || |
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| T |
55061170 |
ggtaacctgcaacaaaaggttgaacgtttttgagcatggattggcctgcagttgaataacggatgtgaccaatggctaagtttccaggtaattgacggag |
55061269 |
T |
|
| Q |
400 |
tttt |
403 |
Q |
| |
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|||| |
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| T |
55061270 |
tttt |
55061273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 27357054 - 27357437
Alignment:
| Q |
1 |
aaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaaggatctctgacaacaacaagtttatctttagtaacaaacacaatt |
100 |
Q |
| |
|
||||||||||| || ||||||||| || |||||||||| ||| | ||| ||||| ||||| || ||| ||||||| ||||| | ||||||||||||||| |
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| T |
27357054 |
aaaaacaacagcaccattacttctcctccccataaccaaaggcctaaacccaaatggatccctcacagcaacaagcttatcctcagtaacaaacacaatc |
27357153 |
T |
|
| Q |
101 |
gaataagcacctttaactttttcacacgcttcaacaattatcgctataaaaggtctatgatttgaagttgcaataagatgaagcaaaacttcagtatcag |
200 |
Q |
| |
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||||||||||||| || || ||||| || ||||||||| | |||||||||||||| |||||||| ||||| | |||||| | |||||||||||||| |
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|
| T |
27357154 |
gaataagcaccttcaagcttctcacatgcatcaacaattcttaaaataaaaggtctatgctttgaagtagcaatcaaatgaagaacaacttcagtatcag |
27357253 |
T |
|
| Q |
201 |
aagtagtgttgaaaattgaaccagattcttcaagttcatttctcaaggaacggtaattgacgaagttaccattatgagcaacaccaacggaaccaaaacg |
300 |
Q |
| |
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|||||||||| ||||| ||||| ||||||||| | | ||| || | ||| ||||| || || ||||| ||||||||||||||||| ||||||||||| |
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|
| T |
27357254 |
aagtagtgttaaaaatcgaacctttttcttcaagcttagctcttaaagtacgataattaactaaattaccgttatgagcaacaccaacagaaccaaaacg |
27357353 |
T |
|
| Q |
301 |
gtaacctgcaacaaaaggttgatcgtttttgagcatggattggcctgcagttgaataacgaacgtgaccaacggctaagtttcc |
384 |
Q |
| |
|
||| || ||||||||||||||| | || || | |||||| || || ||||| ||||||||||| || || | ||||||| |||| |
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|
| T |
27357354 |
gtacccagcaacaaaaggttgaacattcttcaacatggactgtccagcagtagaataacgaacatggccgatggctaagcttcc |
27357437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 44334068 - 44334166
Alignment:
| Q |
1 |
aaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaaggat-ctctgacaacaacaa---gtttatctttagtaacaaaca |
95 |
Q |
| |
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|||||| ||||||| ||||| || |||| |||||||| ||||||||||| |||||||| |||||| | |||||| ||||||||| ||||||||||| |
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| T |
44334068 |
aaaaactacagaaccgttactactacttcacataaccaaaggtcgaaaacaaaaaggatcctctgatagcaacaagttgtttatcttcagtaacaaaca |
44334166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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