View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10537_low_3 (Length: 280)

Name: NF10537_low_3
Description: NF10537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10537_low_3
NF10537_low_3
[»] chr8 (13 HSPs)
chr8 (35-277)||(15446517-15446760)
chr8 (37-276)||(15313636-15313875)
chr8 (37-276)||(15494005-15494244)
chr8 (78-186)||(18052352-18052460)
chr8 (220-276)||(15284256-15284312)
chr8 (220-276)||(15464625-15464681)
chr8 (1-30)||(15314723-15314752)
chr8 (1-30)||(15447564-15447593)
chr8 (1-30)||(15495092-15495121)
chr8 (220-276)||(15298013-15298069)
chr8 (1-29)||(15303850-15303878)
chr8 (220-276)||(15478382-15478438)
chr8 (1-29)||(15484219-15484247)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 35 - 277
Target Start/End: Complemental strand, 15446760 - 15446517
Alignment:
Q  35 tttggggaatttatcatctttaactgccttcgatgttgcttcaaataacttgattggtaaccttcctcaaagtttgggaaacctctcgaatttggaggta 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| |||||    
T  15446760 tttggggaatttatcatctttaactgccttcgatgttgcttcaaataacttgaccggtaaccttcctcaaagtttggggaacctctcgaatttgaaggta 15446661  T
Q  135 ttgggtgttggagaaaattcactctctggagttgtgacccatc-gaaattttgctaatctcttcaatttaaaacgtttgtttttgagttcaccattcttc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| |||||||||| ||||||| | || |    
T  15446660 ttgggtgttggagaaaattcactctctggagttgtgacccatcagacattttgctaatctctttaatttaaaacatttgtttttgggttcaccgtcctcc 15446561  T
Q  234 atctttgattttgatcctcgttggactcctccttttgaacttct 277  Q
    |||||||| ||||||||  |||||||||||||||||||||||||    
T  15446560 atctttgagtttgatcccagttggactcctccttttgaacttct 15446517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 276
Target Start/End: Complemental strand, 15313875 - 15313636
Alignment:
Q  37 tggggaatttatcatctttaactgccttcgatgttgcttcaaataacttgattggtaaccttcctcaaagtttgggaaacctctcgaatttggaggtatt 136  Q
    |||||||| | ||||| || |||| ||| |||||||  | ||||||||| |  ||||  |||||| ||||||| ||||| ||||| ||||| ||||| ||    
T  15313875 tggggaatgtgtcatcattgactgtctttgatgttgtcttaaataacttaaccggtagtcttcctgaaagtttaggaaaactctcaaatttagaggtgtt 15313776  T
Q  137 gggtgttggagaaaattcactctctggagttgtgacccatcgaaattttgctaatctcttcaatttaaaacgtttgtttttgagttcaccattcttcatc 236  Q
    |  ||| |||||||||   || || ||||||||||| |||||||||||||  || || ||||||||||||   ||||  ||  ||||||| || | ||||    
T  15313775 gtatgtaggagaaaataacctttcaggagttgtgacgcatcgaaattttgacaaacttttcaatttaaaagagttgtggtttggttcacccttatccatc 15313676  T
Q  237 tttgattttgatcctcgttggactcctccttttgaacttc 276  Q
    ||  ||||||||||||  |||| |||||||||| ||||||    
T  15313675 ttcaattttgatcctcaatggattcctccttttaaacttc 15313636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 276
Target Start/End: Complemental strand, 15494244 - 15494005
Alignment:
Q  37 tggggaatttatcatctttaactgccttcgatgttgcttcaaataacttgattggtaaccttcctcaaagtttgggaaacctctcgaatttggaggtatt 136  Q
    |||||||| | ||||| || |||| ||| |||||||  | ||||||||| |  ||||  |||||| ||||||| ||||| ||||| ||||| ||||| ||    
T  15494244 tggggaatgtgtcatcattgactgtctttgatgttgtcttaaataacttaaccggtagtcttcctgaaagtttaggaaaactctcaaatttagaggtgtt 15494145  T
Q  137 gggtgttggagaaaattcactctctggagttgtgacccatcgaaattttgctaatctcttcaatttaaaacgtttgtttttgagttcaccattcttcatc 236  Q
    |  ||| |||||||||   || || ||||||||||| |||||||||||||  || || ||||||||||||   ||||  ||  ||||||| || | ||||    
T  15494144 gtatgtaggagaaaataacctttcaggagttgtgacgcatcgaaattttgacaaacttttcaatttaaaagagttgtggtttggttcacccttatccatc 15494045  T
Q  237 tttgattttgatcctcgttggactcctccttttgaacttc 276  Q
    ||  ||||||||||||  |||| |||||||||| ||||||    
T  15494044 ttcaattttgatcctcaatggattcctccttttaaacttc 15494005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 18052460 - 18052352
Alignment:
Q  78 aataacttgattggtaaccttcctcaaagtttgggaaacctctcgaatttggaggtattgggtgttggagaaaattcactctctggagttgtgacccatc 177  Q
    |||||||||| || || ||||||| ||||||||||  | || |||||||||||||| |||| ||||||||||||||| || |||||| ||||  | |||     
T  18052460 aataacttgactgatagccttcctgaaagtttggggcaactatcgaatttggaggtgttggatgttggagaaaattctctatctggaattgtatctcata 18052361  T
Q  178 gaaattttg 186  Q
    |||||||||    
T  18052360 gaaattttg 18052352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 15284312 - 15284256
Alignment:
Q  220 gttcaccattcttcatctttgattttgatcctcgttggactcctccttttgaacttc 276  Q
    ||||||||| ||| ||||||||||||||||| | ||||| |||||||||| ||||||    
T  15284312 gttcaccatcctttatctttgattttgatccccattggattcctccttttaaacttc 15284256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 15464681 - 15464625
Alignment:
Q  220 gttcaccattcttcatctttgattttgatcctcgttggactcctccttttgaacttc 276  Q
    ||||||||| ||| ||||||||||||||||| | ||||| |||||||||| ||||||    
T  15464681 gttcaccatcctttatctttgattttgatccccattggattcctccttttaaacttc 15464625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 15314752 - 15314723
Alignment:
Q  1 tcttgcaaccaaaaagacaaacaaatactc 30  Q
    ||||||||||||||||||||||||||||||    
T  15314752 tcttgcaaccaaaaagacaaacaaatactc 15314723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 15447593 - 15447564
Alignment:
Q  1 tcttgcaaccaaaaagacaaacaaatactc 30  Q
    ||||||||||||||||||||||||||||||    
T  15447593 tcttgcaaccaaaaagacaaacaaatactc 15447564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 15495121 - 15495092
Alignment:
Q  1 tcttgcaaccaaaaagacaaacaaatactc 30  Q
    ||||||||||||||||||||||||||||||    
T  15495121 tcttgcaaccaaaaagacaaacaaatactc 15495092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 15298069 - 15298013
Alignment:
Q  220 gttcaccattcttcatctttgattttgatcctcgttggactcctccttttgaacttc 276  Q
    ||||||||| ||| ||||||||||||||||| |  |||| |||||||||| ||||||    
T  15298069 gttcaccatcctttatctttgattttgatccccactggattcctccttttaaacttc 15298013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 15303878 - 15303850
Alignment:
Q  1 tcttgcaaccaaaaagacaaacaaatact 29  Q
    |||||||||||||||||||||||||||||    
T  15303878 tcttgcaaccaaaaagacaaacaaatact 15303850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 15478438 - 15478382
Alignment:
Q  220 gttcaccattcttcatctttgattttgatcctcgttggactcctccttttgaacttc 276  Q
    ||||||||| ||| ||||||||||||||||| |  |||| |||||||||| ||||||    
T  15478438 gttcaccatcctttatctttgattttgatccccactggattcctccttttaaacttc 15478382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 15484247 - 15484219
Alignment:
Q  1 tcttgcaaccaaaaagacaaacaaatact 29  Q
    |||||||||||||||||||||||||||||    
T  15484247 tcttgcaaccaaaaagacaaacaaatact 15484219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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