View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10537_low_4 (Length: 249)
Name: NF10537_low_4
Description: NF10537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10537_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3059584 - 3059345
Alignment:
| Q |
1 |
tttgccttttgagaagtatgattttgttgattttggtgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059584 |
tttgccttttgagaagtatgattttgttgattttggtgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaa |
3059485 |
T |
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| Q |
101 |
atggtggtggcgtttttcctttgtaccaacaatcactttccttgtggctggttcttttgcaaattccacattttggaaatctttccttcttctttgtatc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059484 |
atggtggtggtgtttttcctttgtaccaacaatcactttccttgtggctggttcttttgcaaattccacattttggaaatctttccttcttctttgtatc |
3059385 |
T |
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| Q |
201 |
tttcccagagtgctctccaacaaatttcttttcacctttg |
240 |
Q |
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| T |
3059384 |
tttcccagagtgctctccaacaaatttcttttcacctttg |
3059345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 17442616 - 17442855
Alignment:
| Q |
1 |
tttgccttttgagaagtatgattttgttgattttggtgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442616 |
tttgccttttgagaagtatgattttgttgattttggtgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaa |
17442715 |
T |
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| Q |
101 |
atggtggtggcgtttttcctttgtaccaacaatcactttccttgtggctggttcttttgcaaattccacattttggaaatctttccttcttctttgtatc |
200 |
Q |
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| T |
17442716 |
atggtggtggtgtttttcctttgtaccaacaatcactttccttgtggctggttcttttgcaaattccacattttggaaatctttccttcttctttgtatc |
17442815 |
T |
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| Q |
201 |
tttcccagagtgctctccaacaaatttcttttcacctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
17442816 |
tttcccagagtgctctccaacaaatttcttttcacctttg |
17442855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4874227 - 4873988
Alignment:
| Q |
1 |
tttgccttttgagaagtatgattttgttgattttggtgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4874227 |
tttgccttttgagaagtatgattttgttgattttggtgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaa |
4874128 |
T |
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| Q |
101 |
atggtggtggcgtttttcctttgtaccaacaatcactttccttgtggctggttcttttgcaaattccacattttggaaatctttccttcttctttgtatc |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4874127 |
atggtggtggtttttttcctttgtaccaacaatcactttccttgtggctggttcttttgcaaattccacattttggaaatctttccttcttctttgtatc |
4874028 |
T |
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| Q |
201 |
tttcccagagtgctctccaacaaatttcttttcacctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
4874027 |
tttcccagagtgctctccaacaaatttcttttcacctttg |
4873988 |
T |
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