View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10537_low_5 (Length: 240)
Name: NF10537_low_5
Description: NF10537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10537_low_5 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 3059925 - 3059701
Alignment:
| Q |
16 |
cacaacttccttctttaaataacaaacaataacctttttcaatcatttggcccacactcaacaggttttgatcaagttcaggaactaaaagtacatcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3059925 |
cacaacttccttctttaaataacaaacaataacctttttcaatcatttggcccacactcaacaggttttgatcaagttcaggaactaaaagtacatcaga |
3059826 |
T |
|
| Q |
116 |
aatgtatttaatacctgttgcagtgtgaattttcaccgttcctctacctgtgatggcaactttctgtccatttccaatctttacagatcctgcagcgggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3059825 |
aatgtatttaatacctgttgcagtgtgaattttcaccgttcctctacctgtgatggcaactttctgtccatttccaatctttacagatcctgcagcgggt |
3059726 |
T |
|
| Q |
216 |
ttgatctctgaaaacagttctggtt |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3059725 |
ttgatctctgaaaacagttctggtt |
3059701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 17442275 - 17442499
Alignment:
| Q |
16 |
cacaacttccttctttaaataacaaacaataacctttttcaatcatttggcccacactcaacaggttttgatcaagttcaggaactaaaagtacatcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17442275 |
cacaacttccttctttaaataacaaacaataacctttttcaatcatttggcccacactcaacaggttttgatcaagttcaggaactaaaagtacatcaga |
17442374 |
T |
|
| Q |
116 |
aatgtatttaatacctgttgcagtgtgaattttcaccgttcctctacctgtgatggcaactttctgtccatttccaatctttacagatcctgcagcgggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17442375 |
aatgtatttaatacctgttgcagtgtgaattttcaccgttcctctacctgtgatggcaactttctgtccatttccaatctttacagatcctgcagcgggt |
17442474 |
T |
|
| Q |
216 |
ttgatctctgaaaacagttctggtt |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
17442475 |
ttgatctctgaaaacagttctggtt |
17442499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 4874568 - 4874344
Alignment:
| Q |
16 |
cacaacttccttctttaaataacaaacaataacctttttcaatcatttggcccacactcaacaggttttgatcaagttcaggaactaaaagtacatcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4874568 |
cacaacttccttctttaaataacaaacaataacctttttcaatcatttggcccacactcaacaggttttgatcaagttcaggaactaaaagtacatcaga |
4874469 |
T |
|
| Q |
116 |
aatgtatttaatacctgttgcagtgtgaattttcaccgttcctctacctgtgatggcaactttctgtccatttccaatctttacagatcctgcagcgggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4874468 |
aatgtatttaatacctgttgcagtgtgaattttcactgttcctctacctgtgatggcaactttctgtccatttccaatctttacagatcctgcagcgggt |
4874369 |
T |
|
| Q |
216 |
ttgatctctgaaaacagttctggtt |
240 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
4874368 |
ttgatctctgaaaacagttttggtt |
4874344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University