View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_1 (Length: 662)
Name: NF10538_low_1
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 16 - 656
Target Start/End: Original strand, 33182929 - 33183569
Alignment:
| Q |
16 |
caacaacaaggtagtgtactatattatgtacttaatgaatcattcaatatccataatactctaacaaatgagtaggctcaggtgaaacaagaaaagaatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33182929 |
caacaacaaggtagtgtactatattatgtacttaatgaatcattcaatatccataatactctaacaaatgagtaggctcaggtgaaacaagaaaagaatc |
33183028 |
T |
|
| Q |
116 |
agcacaatcaaccataccaaagctgctagattcaatccttggtggcataagtgaatcacagcatccagaacaaacaaacaaaggtggaactgtctcagaa |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33183029 |
agcacaatcgaccataccaaagctgctagattcaatccttggtggcataagtgaatcacagcatccagaacaaacaaacaaaggtggaactgtctcagaa |
33183128 |
T |
|
| Q |
216 |
tcatctattccacaacatcttgtatgctgccacacttcacaaatatcacaagccaccattctctcaccatcatcatcttgtgctccacactcacacctca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33183129 |
tcatctattccacaacatcttgtatgctgccacacttcacaaatatcacaagccaccattctctcaccatcatcatcttgtgctccacactcacacctca |
33183228 |
T |
|
| Q |
316 |
ctttccaattatcacttcctccttgatatttcaatggagtacacaaatcaatgccaattccccttacagaaagcttcacaccagattcaatctgtccaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33183229 |
ctttccaattatcacttcctccttgatatttcaatggagtacacaaatcaatgccaattccccttacagaaagcttcacaccagattcaatctgtccaaa |
33183328 |
T |
|
| Q |
416 |
aatcacttcttcatcttctacatccatcaattctttgatatctgtcactatgagtctttcagctatgcaatatgtgtcccttaatgcagcctcagcagtt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33183329 |
aatcacttcttcatcttctacatccatcaattctttgatatctgtcactatgagtctttcagctatgcaatatgtgtcccttaatgcagcctcagcagtt |
33183428 |
T |
|
| Q |
516 |
tgctttaagtctctaactgttgcatgcaatggaacagttacaatctcaccacaagatggcccttttaaatcagacttattctcaacgaaattcggtttca |
615 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33183429 |
tgctttaagtctctaactgttgcatgcaatggaacagttacaatctcaccacaagatggcccttttaaatcagacttattctcaacgaaattcggtttca |
33183528 |
T |
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| Q |
616 |
aatggcaaataaatgtcaaaacttgttccatttcatctctc |
656 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33183529 |
aatggcaaataaatgtcaaaacttgttccatttcatctctc |
33183569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 17888778 - 17888836
Alignment:
| Q |
230 |
acatcttgtatgctgccacacttcacaaatatcacaagccaccattctctcaccatcat |
288 |
Q |
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|||||| ||||| ||||| | ||||||||||||||||| |||||||||||||||||||| |
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| T |
17888778 |
acatctagtatgttgccaaatttcacaaatatcacaagacaccattctctcaccatcat |
17888836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 34358948 - 34358900
Alignment:
| Q |
244 |
gccacacttcacaaatatcacaagccaccattctctcaccatcatcatc |
292 |
Q |
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||||||| |||| ||||||||||||| ||||||||| ||||||||||| |
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| T |
34358948 |
gccacacaccacacatatcacaagccatcattctctctccatcatcatc |
34358900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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