View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_10 (Length: 399)
Name: NF10538_low_10
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 42224134 - 42223766
Alignment:
| Q |
18 |
ggtacgacatgcattgtcttcaacattatgatgtatgttgcacctttagctgtgatggtatgtaatcatcaaacaaacacttaatcttaattttttgttt |
117 |
Q |
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| T |
42224134 |
ggtacgacatgcattgtcttcaacattatgatgtatgttgcacctttagctgtgatggtatgtaatcatcaaacaaacacttaatcttaatttttggttt |
42224035 |
T |
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| Q |
118 |
ggaagcgtttttattgaatttgaagtatttgataaaatttactattgctttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctcc |
217 |
Q |
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| T |
42224034 |
ggatgcgtttttattgaatttgaagtatttgataaaatttactattgctttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctcc |
42223935 |
T |
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| Q |
218 |
atatctcttgcttcctttggaaatggtgtggcttggacaacttactctctcctccctttcgacaaattcatcactgtaaacaagctaaatccnnnnnnnn |
317 |
Q |
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| T |
42223934 |
atatctcttgcttcctttggaaatggtgtggcttggacaacttactctctcctccctttcgacaaattcatcactgtaaacaaactaaatccttttgctt |
42223835 |
T |
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| Q |
318 |
nnnnnnnnnnnncctcgacatattgatgaaatagacgtaaagctaatgaatgaccattgctgttgttct |
386 |
Q |
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| T |
42223834 |
tttttcctttttcctcgacatattgatgaaatagacgtaaagctaatgaatgaccattgttgttgttct |
42223766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 36675871 - 36675959
Alignment:
| Q |
167 |
ttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggac |
255 |
Q |
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| T |
36675871 |
ttgcagaaactagtgatcaagactaaaagtgttgagttcatgccgtttttcctatctttagcttcatttggcaatggtgtttcttggac |
36675959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 36685953 - 36686041
Alignment:
| Q |
167 |
ttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggac |
255 |
Q |
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||||||||||| ||||||| ||||||||| |||||| ||||||| | | | ||||| | ||||| ||||| |||||||| ||||||| |
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| T |
36685953 |
ttgcagaaactagtgatcaagactaaaagtgttgagttcatgccgtttttcctatctttagcttcatttggcaatggtgtttcttggac |
36686041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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