View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_12 (Length: 367)
Name: NF10538_low_12
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 3332362 - 3332019
Alignment:
| Q |
19 |
caaacgccttgaaaactcacgtgatggaagttgcagacggttgtgacgttgttgaaagtgtcaacaactttgctagacgccgtcaaagaggcgtttgcat |
118 |
Q |
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| T |
3332362 |
caaacgccttgaaaactcacgtgatggaagttgcagacggttgtgacgttgttgaaagtgtcaacaacttcgctagacgccgtcaaagaggcgtttgcat |
3332263 |
T |
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| Q |
119 |
catgagtgggacagggacggttacaaacgtgacactaaggcaaccggcttctcctggggctgttgttacacttcatggaaggttcgagattctttcgctg |
218 |
Q |
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| T |
3332262 |
catgagtgggacagggacggttacaaacgtgacactaaggcaaccggcttctcctggagctgttgttacacttcatggaaggttcgagattctttcgctg |
3332163 |
T |
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| Q |
219 |
gctggatcgtttcttccaccacctgctccgcccgctgcttctggtttgaccatatatttagcgggcggacaagggcaggttgttggtggaagtgttgttg |
318 |
Q |
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| T |
3332162 |
gctggatcgtttcttccaccacctgctccgcccgctgcttctggtttgaccatatatttagcgggcggacaagggcaggttgttggtggaagtgttgttg |
3332063 |
T |
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| Q |
319 |
gtgctttgattgcttctggacctgttgttattatctctgcttct |
362 |
Q |
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| T |
3332062 |
gtgctttgattgcttctggacctgttgttattatgtctgcttct |
3332019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 346
Target Start/End: Original strand, 39959944 - 39960017
Alignment:
| Q |
273 |
tatttagcgggcggacaagggcaggttgttggtggaagtgttgttggtgctttgattgcttctggacctgttgt |
346 |
Q |
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| T |
39959944 |
tatttagcgggtgctcaaggacaagttgttggaggtgctgtagttggtgctttgattgcttcaggacctgttgt |
39960017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 16578946 - 16579014
Alignment:
| Q |
276 |
ttagcgggcggacaagggcaggttgttggtggaagtgttgttggtgctttgattgcttctggacctgtt |
344 |
Q |
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| T |
16578946 |
ttagccggtggacaagggcaagttgttggtggaagtgttgttggacctttgattgctgctggacctgtt |
16579014 |
T |
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