View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10538_low_14 (Length: 340)
Name: NF10538_low_14
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 11733956 - 11734260
Alignment:
| Q |
18 |
acatcaaatacaacacaaattcaacatcactaaaaactaaaaaggaaaataatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattct |
117 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11733956 |
acatcagatacaacacaaattcaacatcactgaaaactaaaaaggaaaataatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattct |
11734055 |
T |
|
| Q |
118 |
ctaacaacacaactgcaattatctcaaaacaatacatattcaacatggctaaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11734056 |
ctaacaacacaactgcaattatctcaaaacaatacatattcaacatggctaaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcac |
11734155 |
T |
|
| Q |
218 |
aattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11734156 |
aattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcgccttcggtataatgacctttagcccaattattcccagcaccagactg |
11734255 |
T |
|
| Q |
318 |
accga |
322 |
Q |
| |
|
||||| |
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|
| T |
11734256 |
accga |
11734260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 314
Target Start/End: Original strand, 53148129 - 53148244
Alignment:
| Q |
199 |
ttaccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaat |
298 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||| |
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| T |
53148129 |
ttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaat |
53148228 |
T |
|
| Q |
299 |
tattcccagcaccaga |
314 |
Q |
| |
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|||| ||||||||||| |
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| T |
53148229 |
tattaccagcaccaga |
53148244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 5530824 - 5530712
Alignment:
| Q |
200 |
taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || |
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|
| T |
5530824 |
taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt |
5530725 |
T |
|
| Q |
300 |
attcccagcacca |
312 |
Q |
| |
|
||||||||||||| |
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|
| T |
5530724 |
attcccagcacca |
5530712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 5922978 - 5923090
Alignment:
| Q |
200 |
taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || |
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|
| T |
5922978 |
taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt |
5923077 |
T |
|
| Q |
300 |
attcccagcacca |
312 |
Q |
| |
|
||| ||||||||| |
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|
| T |
5923078 |
attaccagcacca |
5923090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 5936387 - 5936499
Alignment:
| Q |
200 |
taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt |
299 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| || |
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|
| T |
5936387 |
taccctgcaagcaatcactgttttcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgtcctttagcccagtt |
5936486 |
T |
|
| Q |
300 |
attcccagcacca |
312 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
5936487 |
attaccagcacca |
5936499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 322
Target Start/End: Original strand, 38178777 - 38178899
Alignment:
| Q |
200 |
taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt |
299 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| | |||||||| | ||| |||||||| | |||||| |||||||| ||||||||||| |||||||| |
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|
| T |
38178777 |
taccttgcaagcaatcgcaattctcagcctctttcctcacaacatccaaaacggaatcaatcaactcagcgccttcggtgtaatgacctttcgcccaatt |
38178876 |
T |
|
| Q |
300 |
attcccagcaccagactgaccga |
322 |
Q |
| |
|
||| || ||||| |||||||||| |
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|
| T |
38178877 |
atttccggcaccggactgaccga |
38178899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 40919556 - 40919664
Alignment:
| Q |
200 |
taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt |
299 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| |
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|
| T |
40919556 |
taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt |
40919655 |
T |
|
| Q |
300 |
attcccagc |
308 |
Q |
| |
|
||| ||||| |
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|
| T |
40919656 |
attaccagc |
40919664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 317
Target Start/End: Complemental strand, 45319506 - 45319388
Alignment:
| Q |
199 |
ttaccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaat |
298 |
Q |
| |
|
||||||||||||||||||||||||||| | || || | ||||||||||||||| | ||||| ||||| ||||| || || |||||||| || || ||| |
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|
| T |
45319506 |
ttaccttgcaagcaatcacaattctcaacctccttccttacaacatcaagaacaaagtcaatgagctcggcaccctcagtgtaatgacccttggcgaaat |
45319407 |
T |
|
| Q |
299 |
tattcccagcaccagactg |
317 |
Q |
| |
|
| || || ||||||||||| |
|
|
| T |
45319406 |
tgtttccggcaccagactg |
45319388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 322
Target Start/End: Complemental strand, 34839953 - 34839842
Alignment:
| Q |
211 |
caatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcac |
310 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||| || || || | |
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|
| T |
34839953 |
caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatgacctttcgcccaattgttaccggcgc |
34839854 |
T |
|
| Q |
311 |
cagactgaccga |
322 |
Q |
| |
|
| |||||||||| |
|
|
| T |
34839853 |
cggactgaccga |
34839842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 45454432 - 45454538
Alignment:
| Q |
211 |
caatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcac |
310 |
Q |
| |
|
||||||||||||||||| || || | ||||||||||| || |||||||| | |||||| ||||| ||||| |||||||| ||||| || || || |||| |
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|
| T |
45454432 |
caatcacaattctcagcctccttcctgacaacatcaagcaccgaatcaatcaactcagctccttctgtatagtgacctttcgcccagttgtttccggcac |
45454531 |
T |
|
| Q |
311 |
cagactg |
317 |
Q |
| |
|
| ||||| |
|
|
| T |
45454532 |
cggactg |
45454538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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