View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_16 (Length: 334)
Name: NF10538_low_16
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 54693091 - 54692793
Alignment:
| Q |
17 |
cagtgcagctaattaaagatgctttacttcacacaaaagaatgcacaagggaacttcagtccatcataagaagaaggggaggtggattggagctcacagc |
116 |
Q |
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| T |
54693091 |
cagtgcagctaattaaagatgctttacttcacacaaaagaatgcacaagggaacttcagtccatcataagaagaaggggaggtggattggtg-------- |
54693000 |
T |
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| Q |
117 |
agaggcaaagaaattcttgatatctagaaattaaggtagtgaaaaaggccatttccaaagccttgacaaatttgaaggacactaccaaatattataacat |
216 |
Q |
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| T |
54692999 |
----gcaaagaaattcttgatatctagaaattaaggtagtgaaaaaggccatttccaaagccttgacaaatttgaagggcactaccaaatattataacat |
54692904 |
T |
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| Q |
217 |
cttgtctacaaacaaagaccatcaatcagtgaagtgacattgattaacttattacaagatgttgaattggctacactatctacatttgagataatactgc |
316 |
Q |
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| T |
54692903 |
cttgtctacaaacaaagaccatcaatcagtgaagtgacattgattaacttattacaagatgttgaattggctacactatctacatttgagataatactgc |
54692804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 31 - 326
Target Start/End: Complemental strand, 54700438 - 54700152
Alignment:
| Q |
31 |
aaagatgctttacttcacacaaaagaatgcacaagggaacttcagtccatcataagaagaaggggaggtggattggagctcacagcagaggcaaagaaat |
130 |
Q |
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| T |
54700438 |
aaagatgctttactgcatacaaaagaatgtacaagggaacttcaatccatcataagaagaaggggagatggattggagctcactgcagaggctaagaaat |
54700339 |
T |
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| Q |
131 |
tcttgatatctagaaattaaggtagtgaaaaaggccatttccaaagccttgacaaatttgaaggacactaccaaatattataacatcttgtctacaaaca |
230 |
Q |
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| T |
54700338 |
tcatgacatcaaga----aaggtagtgaaaaaggccatctccaaagccttggcaaatttgaagggaaataccaaacatagcaacatcttatctacaaaca |
54700243 |
T |
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| Q |
231 |
aagaccatcaatcagtgaagtgacattgattaacttattacaagatgttgaattggctacactatctacatttgagataatactgcaattcatctc |
326 |
Q |
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| T |
54700242 |
atgaccatcaaac-----agtggctttgattagcttattacaagatgttgaagtggcaaccctatctacatttcagacaatattgcaatttatctc |
54700152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 54688506 - 54688444
Alignment:
| Q |
30 |
taaagatgctttacttcacacaaaagaatgcacaagggaacttcagtccatcataagaagaag |
92 |
Q |
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| T |
54688506 |
taaagatgctttaattcacacaaaagaatgcacaagggaacttcaatccctcataagaagaag |
54688444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 303
Target Start/End: Complemental strand, 54688379 - 54688230
Alignment:
| Q |
149 |
aaggtagtgaaaaaggccatttccaaagccttgacaaatttgaaggacactaccaaatattataacatcttgtctacaaacaaagaccatcaatcagtga |
248 |
Q |
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| T |
54688379 |
aaggtagtgagaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtgg |
54688280 |
T |
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| Q |
249 |
agtgacattgattaacttattacaagatgttgaattggctacactatctacattt |
303 |
Q |
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| T |
54688279 |
-----ctttgattaacttattacaagatgttgaagtggcaaccctatctacattt |
54688230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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