View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10538_low_17 (Length: 334)

Name: NF10538_low_17
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10538_low_17
NF10538_low_17
[»] chr3 (9 HSPs)
chr3 (1-317)||(3745203-3745519)
chr3 (228-317)||(4142865-4142954)
chr3 (228-317)||(4158675-4158764)
chr3 (234-317)||(3753819-3753902)
chr3 (228-288)||(803952-804012)
chr3 (240-291)||(1931894-1931945)
chr3 (240-278)||(988687-988725)
chr3 (228-286)||(12132320-12132378)
chr3 (238-290)||(967931-967983)
[»] chr5 (4 HSPs)
chr5 (234-317)||(11081414-11081497)
chr5 (240-286)||(23764997-23765043)
chr5 (240-286)||(23814845-23814891)
chr5 (6-42)||(2067612-2067648)
[»] chr8 (2 HSPs)
chr8 (238-283)||(31145143-31145188)
chr8 (240-289)||(19727180-19727229)
[»] chr1 (2 HSPs)
chr1 (234-317)||(25611733-25611819)
chr1 (255-307)||(23896907-23896959)
[»] chr7 (1 HSPs)
chr7 (1-41)||(1078727-1078767)
[»] chr4 (1 HSPs)
chr4 (240-277)||(22672879-22672916)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 3745519 - 3745203
Alignment:
Q  1 catctgcaatacaaaggatgccgttgcaagagccaacgaagtcatgtaaaatggacagaggataatctccattgaaaccgttaggagaatactcaaaccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  3745519 catctgcaatacaaaggatgccgttgcaagagccaacgaagtcatgtaaaatggaccgaggataatctccattgaaaccgttaggagaatattcaaaccg 3745420  T
Q  101 tgtggagttagatgatgttatgtttgtgaaaatagagtccattggttcagataagagaatgtacttgcctaagtaacgggtgtggtcgtagagtaag--- 197  Q
    ||||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  3745419 tgtggagttagatg---ttatgtttgtgaaaatagagtcgattggttcagataagagaatgtacttgcctaagtaacgggtgtggtcgtagagtaagaag 3745323  T
Q  198 tggatgtttcgagcagtagacacatgtaactgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaagga 297  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3745322 tggatgtttcgagcagtagacacatttaactgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaagga 3745223  T
Q  298 tgaacttgaccggtagccta 317  Q
    ||||||| ||||||||||||    
T  3745222 tgaacttcaccggtagccta 3745203  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 4142865 - 4142954
Alignment:
Q  228 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagccta 317  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  4142865 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaactttactggtagccta 4142954  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 4158675 - 4158764
Alignment:
Q  228 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagccta 317  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  4158675 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacattggaatcggaggatgaactttaccggtagccta 4158764  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 3753902 - 3753819
Alignment:
Q  234 ttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagccta 317  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  3753902 ttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaaccta 3753819  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 803952 - 804012
Alignment:
Q  228 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcgga 288  Q
    ||||||||| |||| |||| |||  |||||||||||||||||||||||||||| |||||||    
T  803952 tgctttttggcaaagttggcatcgcatattagagaattccatgacttgcaaacgcatcgga 804012  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 1931894 - 1931945
Alignment:
Q  240 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaatc 291  Q
    |||||||| ||||| |||||||||||| ||||||||||||| || |||||||    
T  1931894 aatttggggtcagagattagagaattctatgacttgcaaacgcaccggaatc 1931945  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 988725 - 988687
Alignment:
Q  240 aatttgggatcagatattagagaattccatgacttgcaa 278  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  988725 aatttgggatcagagattaaagaattccatgacttgcaa 988687  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 12132378 - 12132320
Alignment:
Q  228 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcg 286  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| || ||||| || |||||    
T  12132378 tgcttcttggcaaatttgggatcagatatgagagaattccaggatttgcatacgcatcg 12132320  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 967983 - 967931
Alignment:
Q  238 caaatttgggatcagatattagagaattccatgacttgcaaacacatcggaat 290  Q
    ||||||| | |||||  |||||||||||||| |||||||| ||||||||||||    
T  967983 caaatttagaatcagtgattagagaattccacgacttgcacacacatcggaat 967931  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 11081497 - 11081414
Alignment:
Q  234 ttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagccta 317  Q
    ||||| ||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  11081497 ttgacgaatttgggatcagatattaaagaatttcacgacttgcaaacacattggaatcgaaggatgaacttaaccggtaaccta 11081414  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 23764997 - 23765043
Alignment:
Q  240 aatttgggatcagatattagagaattccatgacttgcaaacacatcg 286  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23764997 aatttgggatcagaaattagagaattccaccacttgcacacacatcg 23765043  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 23814845 - 23814891
Alignment:
Q  240 aatttgggatcagatattagagaattccatgacttgcaaacacatcg 286  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23814845 aatttgggatcagaaattagagaattccaccacttgcacacacatcg 23814891  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 2067612 - 2067648
Alignment:
Q  6 gcaatacaaaggatgccgttgcaagagccaacgaagt 42  Q
    |||||||||| |||||| |||||||||||||||||||    
T  2067612 gcaatacaaatgatgccattgcaagagccaacgaagt 2067648  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 31145143 - 31145188
Alignment:
Q  238 caaatttgggatcagatattagagaattccatgacttgcaaacaca 283  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  31145143 caaatttgggatcagatataagagaattccatgacttgcaaacaca 31145188  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 19727229 - 19727180
Alignment:
Q  240 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaa 289  Q
    |||||| ||||||| |||||||||||| | ||||||||||||||||||||    
T  19727229 aatttgtgatcagagattagagaattcaacgacttgcaaacacatcggaa 19727180  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 25611733 - 25611819
Alignment:
Q  234 ttgacaaatttgggatca---gatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagccta 317  Q
    |||||||| |||||||||   |||||||||||||||||||||||||| || || | |||| |||||| |||||||||||| ||||||    
T  25611733 ttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagccta 25611819  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 23896907 - 23896959
Alignment:
Q  255 attagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgac 307  Q
    ||||||||||||||||||||||| || || |||||| | |||| |||||||||    
T  23896907 attagagaattccatgacttgcagacgcagcggaattgtaggaggaacttgac 23896959  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1078727 - 1078767
Alignment:
Q  1 catctgcaatacaaaggatgccgttgcaagagccaacgaag 41  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  1078727 catctgcaatacaaaggatgccattgcaagagccaacgaag 1078767  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 22672879 - 22672916
Alignment:
Q  240 aatttgggatcagatattagagaattccatgacttgca 277  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  22672879 aatttgcgatcagagattagagaattccatgacttgca 22672916  T

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