View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_18 (Length: 319)
Name: NF10538_low_18
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 1157212 - 1156905
Alignment:
| Q |
1 |
ccttatttgagcataggtacaacaaggatttatggtaggtgtggtaatcgtttgaactgttcagtttcgctagcacagttgtgcaatggatttgttaaag |
100 |
Q |
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| T |
1157212 |
ccttatttgagcataggtacaaaatatatttatggtaggtgtggtaatcgcttgaaccgttcagtttccctagcacagctgtgcaatggatttgttaaag |
1157113 |
T |
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| Q |
101 |
gtgctaccactttcatcattactgatgatctgattgtcttgccgcactccatcgatcacacgttattggatctgatcaagaatttgggaatgaaaaacac |
200 |
Q |
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| T |
1157112 |
gtgctacgacttttgtcattactgatgatctatttgtctcgccacactccatcaatcacacgttattggatctgatcaagaatttgggaatgaaaaacac |
1157013 |
T |
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| Q |
201 |
aagttcagtaaaagaaatgactgtcaatgtcactaaggaaagggttttatatttgcaattcatttttgtttcctaaatcagtgttcatagtttcttggta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |
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| T |
1157012 |
aagttcagtaaaagaaatgactgtcaatgtcactaaggaaaaggttttatatttgcaattcatttttgtttcctaaatcattgttcttagtttcttagta |
1156913 |
T |
|
| Q |
301 |
ctttctct |
308 |
Q |
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||| |||| |
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| T |
1156912 |
cttgctct |
1156905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 23259227 - 23258938
Alignment:
| Q |
5 |
atttgagcataggtacaacaaggatttatggtaggtgtggtaatcgtttgaactgttcagtttcgctagcacagttgtgcaatggatttgttaaaggtgc |
104 |
Q |
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| T |
23259227 |
atttaagcattggtacaaaaagaaattattgtaggtgtgaaaatcgtatgaaccgttcggtttccatgacacagtcaggcaatggatttgttaaagatga |
23259128 |
T |
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| Q |
105 |
taccactttcatcattactgatgatctgattgtcttgccgcactccatcgatcacacgttattggatctgatcaagaatttgggaatgaaaaacacaagt |
204 |
Q |
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| T |
23259127 |
ttctatgttttttgttactgatgatctaactgtcttgccgcactctatggatcacacgttgtttggtctggtcaataatttgcaaatgagaaacacaagt |
23259028 |
T |
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| Q |
205 |
tcagtaaaagaaatgactgtcaatgtcactaaggaaagggtttt-atatttgcaattcatttttgtttcctaaatcagtgttcatagttt |
293 |
Q |
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||||||||||||||||| ||| ||||||| ||||||| |||||| |||||||||||| ||||||| | ||||||||| ||||| |||||| |
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| T |
23259027 |
tcagtaaaagaaatgacggtctatgtcacgaaggaaaaggttttaatatttgcaattaatttttgctccctaaatcattgttcttagttt |
23258938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 23251337 - 23251223
Alignment:
| Q |
135 |
tgtcttgccgcactccatcgatcacacgttattggatctgatcaagaatttgggaatgaaaaacacaagttcagtaaaagaaatgactgtcaatgtcact |
234 |
Q |
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|||||||||||| ||||| ||||||| | | || ||||||| ||| || || ||||| |||| ||||||||| | ||||||||||| ||||||||||| |
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| T |
23251337 |
tgtcttgccgcattccatggatcacatgatctttgatctgagcaacaactttggaataaaaagcacaagttcgatcaaagaaatgacggtcaatgtcaca |
23251238 |
T |
|
| Q |
235 |
aaggaaagggtttta |
249 |
Q |
| |
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|||| || ||||||| |
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| T |
23251237 |
aagggaaaggtttta |
23251223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 23316758 - 23316708
Alignment:
| Q |
198 |
cacaagttcagtaaaagaaatgactgtcaatgtcactaaggaaagggtttt |
248 |
Q |
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||||||||| | ||||||||||||||| ||||||||||| |||| |||||| |
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| T |
23316758 |
cacaagttctgcaaaagaaatgactgtaaatgtcactaaagaaaaggtttt |
23316708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 23327138 - 23327061
Alignment:
| Q |
176 |
tcaagaatttgggaatgaaaaacacaagttcagtaaaagaaatgactgtcaatgtcactaaggaa-agggttttatat |
252 |
Q |
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||||||||| || || |||| |||||||||| |||| |||||||||||||||| ||||||||| ||| |||||||| |
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| T |
23327138 |
tcaagaattatgggataaaaagcacaagttcactaaagcaaatgactgtcaatgttactaaggaacaggtttttatat |
23327061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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