View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_19 (Length: 316)
Name: NF10538_low_19
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 39478193 - 39478491
Alignment:
| Q |
1 |
atgatgaaatcaaaaaacagtttacaaaccttaaaccaattgacaaggggatcaactattcccttgtatatttatcatagtctcataagatagtgccaga |
100 |
Q |
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| T |
39478193 |
atgatgaaatcaaaaaacagtttacaaaccgtaaaccaattgacaaggggatcaactattcccttgtatatttatcatagtctcataagatagtgccaga |
39478292 |
T |
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| Q |
101 |
tatttctcacctgatgagatcctccttatttcagaggctttggttagtcaagctgagaagcttaaggaaattgttgacaccttttgcgactgctctggac |
200 |
Q |
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| T |
39478293 |
tatttctcacctgatgagatcctccttatttcagaggctttggttagtcaagctgagaagcttaaggaaattgttgacaccttttgcgactgctctggac |
39478392 |
T |
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| Q |
201 |
aatgtggctcgaaggcaaccttgaattattattacattggtgcttacctgttacaatatgtaatctcatctgcatcagattcaaagtttatgatatata |
299 |
Q |
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| T |
39478393 |
aatgtggctcgaaggcaaccttgaattattattacattggtgcttacctgttacaatatgtaatctcatctgcatcaaattcaaagtttatgatatata |
39478491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 97 - 299
Target Start/End: Original strand, 39474316 - 39474519
Alignment:
| Q |
97 |
cagatatttctcacctgatgagatcctccttatttcagaggctttggttagtcaagctgagaagcttaaggaaattgttgacaccttttgcgactgctct |
196 |
Q |
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|||||||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39474316 |
cagatatttctcacctgatgagttcctcctcatgtcagaggctttggttactcaagctgagaagcttaaggaaattgttgacaccttttgcgactgctct |
39474415 |
T |
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| Q |
197 |
gga----caatgtggctcgaaggcaaccttgaattattattacattggtgcttacctgttacaatatgtaatctcatctgcatcagattcaaagtttatg |
292 |
Q |
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| T |
39474416 |
ggataatgaatgtggcctgaaggcatccttga---attattacattggtgcttacctgttacaatatgtaatctcatctgcatcagattcaaagtttatg |
39474512 |
T |
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| Q |
293 |
atatata |
299 |
Q |
| |
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||||||| |
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| T |
39474513 |
atatata |
39474519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 109 - 272
Target Start/End: Original strand, 39485496 - 39485658
Alignment:
| Q |
109 |
acctgatgagatcctccttatttcagaggctttggttagtcaagctgagaagcttaaggaaattgttgacaccttttgcgactgctctggacaatgtggc |
208 |
Q |
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|||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |
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| T |
39485496 |
accttatgagatcctccttatgtcagaggctttggttattcaagctgagaagcttaaggaaattgttgacaccttttccaactgctctggacaatgtagc |
39485595 |
T |
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| Q |
209 |
tcgaaggcaaccttgaattattattacattggtgcttacctgtta--caatatgtaatctcatctg |
272 |
Q |
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||||||| |||||| | |||||| |||||||||||| |||| | ||||||||||| ||||| |
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| T |
39485596 |
tcgaaggtttccttga---aatattactttggtgcttaccagttaacccatatgtaatctaatctg |
39485658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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