View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_20 (Length: 310)
Name: NF10538_low_20
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 47051523 - 47051243
Alignment:
| Q |
15 |
tcaaaattgattgttattcaactttatttatttattttctgcttagttcttaacggttaatgcatggcttcaaatcttcctcctggattctgaatttttc |
114 |
Q |
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| T |
47051523 |
tcaaaattgattgttattcaactttatttatttattttctgcttagttcttaacggttaatgcatggcttcaaatcttcctcctggattctgaatttttc |
47051424 |
T |
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| Q |
115 |
acgcatgatccaataataactaacaagtggtgctgtgctcactgattaatgcacaacatcaatcaagggaaaatcaagaaaaggtaataaagttatttct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47051423 |
acgcatgatccaataataactaacaagtggtgctgtgctcactgattaatgcacaacatcaatcaagggaaaatcaagaaaagg---taaagttatttct |
47051327 |
T |
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| Q |
215 |
gcataaaaacgtgtggggtagggaaaaacagaaatttctttggcacttatacgacttcaatgttatgcatttactcaaggtctc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47051326 |
gcataaaaacgtgtggggtagggaaaaacagaaatttctttggcacttatacgacttcaatgttatgcatttactcaaggtctc |
47051243 |
T |
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