View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10538_low_22 (Length: 305)

Name: NF10538_low_22
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10538_low_22
NF10538_low_22
[»] chr8 (20 HSPs)
chr8 (115-276)||(32890668-32890828)
chr8 (115-276)||(32896792-32896952)
chr8 (115-276)||(5542380-5542540)
chr8 (115-293)||(22219931-22220107)
chr8 (115-276)||(36818752-36818911)
chr8 (158-293)||(39727511-39727645)
chr8 (115-276)||(10699809-10699969)
chr8 (115-276)||(42993223-42993380)
chr8 (15-119)||(39728166-39728270)
chr8 (115-277)||(42033581-42033741)
chr8 (115-276)||(10705618-10705777)
chr8 (15-119)||(10704969-10705073)
chr8 (115-293)||(39735751-39735918)
chr8 (115-275)||(9935063-9935217)
chr8 (23-103)||(32896151-32896231)
chr8 (157-275)||(14417763-14417879)
chr8 (15-119)||(14415080-14415184)
chr8 (23-119)||(5543085-5543183)
chr8 (162-277)||(1883038-1883151)
chr8 (240-293)||(1171249-1171302)
[»] chr4 (26 HSPs)
chr4 (116-277)||(26957022-26957182)
chr4 (115-276)||(48160739-48160899)
chr4 (115-276)||(24287767-24287926)
chr4 (115-276)||(48166958-48167118)
chr4 (115-276)||(6257425-6257584)
chr4 (116-276)||(33461612-33461770)
chr4 (15-119)||(26957727-26957831)
chr4 (115-276)||(10733572-10733729)
chr4 (115-276)||(10739559-10739716)
chr4 (115-276)||(10947341-10947498)
chr4 (115-276)||(10953328-10953485)
chr4 (115-293)||(50168375-50168550)
chr4 (115-276)||(33458487-33458646)
chr4 (115-211)||(26971839-26971934)
chr4 (115-279)||(44831836-44831994)
chr4 (23-119)||(48166318-48166414)
chr4 (23-114)||(17627652-17627743)
chr4 (23-119)||(10734273-10734371)
chr4 (23-119)||(10948042-10948140)
chr4 (115-293)||(50155738-50155914)
chr4 (125-280)||(49976382-49976528)
chr4 (23-119)||(50167731-50167829)
chr4 (146-276)||(4632192-4632321)
chr4 (115-189)||(17627080-17627154)
chr4 (115-168)||(19686644-19686697)
chr4 (117-189)||(35177578-35177650)
[»] chr3 (33 HSPs)
chr3 (115-276)||(10769189-10769349)
chr3 (115-276)||(11839945-11840105)
chr3 (115-276)||(38449283-38449443)
chr3 (115-276)||(38455770-38455930)
chr3 (115-276)||(10238432-10238592)
chr3 (115-276)||(10244554-10244714)
chr3 (115-276)||(10760870-10761030)
chr3 (115-276)||(42191440-42191600)
chr3 (115-276)||(42197382-42197542)
chr3 (115-274)||(26429639-26429797)
chr3 (115-276)||(8331567-8331726)
chr3 (117-276)||(17056013-17056170)
chr3 (115-276)||(49151392-49151551)
chr3 (115-276)||(49157459-49157618)
chr3 (115-276)||(30051322-30051480)
chr3 (118-279)||(13444840-13445000)
chr3 (115-293)||(28964660-28964828)
chr3 (115-290)||(48128247-48128419)
chr3 (115-197)||(13367135-13367216)
chr3 (15-119)||(24644414-24644518)
chr3 (23-103)||(49156818-49156898)
chr3 (15-119)||(10761574-10761676)
chr3 (23-119)||(11840651-11840750)
chr3 (23-119)||(42192146-42192245)
chr3 (147-276)||(55003632-55003756)
chr3 (23-119)||(38449987-38450087)
chr3 (196-276)||(13837534-13837613)
chr3 (115-277)||(53069278-53069430)
chr3 (23-119)||(10239137-10239231)
chr3 (115-188)||(9760498-9760570)
chr3 (234-293)||(24643756-24643815)
chr3 (224-294)||(12108873-12108943)
chr3 (117-186)||(46656462-46656531)
[»] chr2 (26 HSPs)
chr2 (115-279)||(35084896-35085059)
chr2 (115-279)||(35090869-35091032)
chr2 (115-276)||(13455879-13456039)
chr2 (115-276)||(13461820-13461980)
chr2 (115-276)||(44717025-44717185)
chr2 (115-266)||(28683175-28683324)
chr2 (115-276)||(30965107-30965267)
chr2 (115-276)||(31002156-31002316)
chr2 (115-276)||(36750194-36750354)
chr2 (115-276)||(31008134-31008294)
chr2 (115-276)||(13149904-13150069)
chr2 (16-119)||(35440294-35440397)
chr2 (115-277)||(23343335-23343494)
chr2 (115-262)||(11048785-11048934)
chr2 (15-119)||(23342705-23342809)
chr2 (115-194)||(35439671-35439750)
chr2 (23-103)||(28683883-28683963)
chr2 (23-103)||(35085620-35085700)
chr2 (194-293)||(35438908-35439006)
chr2 (115-274)||(19879374-19879536)
chr2 (23-119)||(13461175-13461274)
chr2 (55-119)||(25232637-25232701)
chr2 (115-162)||(23284725-23284772)
chr2 (22-103)||(29479684-29479766)
chr2 (23-103)||(25760021-25760101)
chr2 (213-280)||(29034697-29034764)
[»] scaffold0208 (4 HSPs)
scaffold0208 (115-276)||(6302-6462)
scaffold0208 (115-276)||(12175-12335)
scaffold0208 (15-119)||(30282-30386)
scaffold0208 (15-101)||(11519-11604)
[»] chr6 (22 HSPs)
chr6 (115-276)||(8651023-8651183)
chr6 (115-276)||(4580541-4580701)
chr6 (114-277)||(21770786-21770946)
chr6 (115-276)||(25343405-25343564)
chr6 (115-276)||(25353991-25354151)
chr6 (115-276)||(21191086-21191249)
chr6 (115-277)||(21197249-21197420)
chr6 (123-279)||(31756437-31756591)
chr6 (115-241)||(21783579-21783705)
chr6 (115-241)||(21789802-21789928)
chr6 (115-293)||(17581416-17581589)
chr6 (15-119)||(17580765-17580869)
chr6 (23-103)||(32030407-32030487)
chr6 (115-197)||(28728064-28728145)
chr6 (23-119)||(21191794-21191892)
chr6 (15-65)||(6102637-6102687)
chr6 (118-237)||(30905841-30905957)
chr6 (23-119)||(8651727-8651826)
chr6 (23-119)||(21771488-21771587)
chr6 (15-95)||(17901196-17901276)
chr6 (115-144)||(12801646-12801675)
chr6 (42-95)||(13006846-13006899)
[»] chr5 (22 HSPs)
chr5 (115-276)||(12686399-12686558)
chr5 (115-276)||(12692501-12692660)
chr5 (115-276)||(7389767-7389927)
chr5 (115-276)||(32094441-32094601)
chr5 (115-276)||(32097242-32097402)
chr5 (115-266)||(28525616-28525765)
chr5 (115-276)||(41297059-41297222)
chr5 (115-266)||(28531712-28531861)
chr5 (115-277)||(19066331-19066491)
chr5 (115-293)||(14609950-14610124)
chr5 (115-277)||(19059990-19060150)
chr5 (115-293)||(20499918-20500094)
chr5 (17-119)||(30771415-30771517)
chr5 (115-293)||(30772062-30772239)
chr5 (23-103)||(28526326-28526406)
chr5 (15-119)||(19060639-19060743)
chr5 (23-119)||(41296418-41296517)
chr5 (116-293)||(30384589-30384762)
chr5 (116-189)||(33753540-33753612)
chr5 (15-119)||(32095146-32095248)
chr5 (15-101)||(12687129-12687214)
chr5 (120-169)||(33849194-33849242)
[»] chr1 (18 HSPs)
chr1 (115-276)||(25387724-25387884)
chr1 (115-276)||(31051324-31051484)
chr1 (115-293)||(8093050-8093225)
chr1 (115-276)||(1078024-1078184)
chr1 (115-276)||(25381755-25381915)
chr1 (115-276)||(31057824-31057984)
chr1 (115-276)||(34739766-34739925)
chr1 (115-277)||(44409780-44409941)
chr1 (15-103)||(12184544-12184632)
chr1 (115-277)||(24926980-24927140)
chr1 (115-276)||(38152184-38152342)
chr1 (115-276)||(50305977-50306129)
chr1 (15-103)||(24927701-24927789)
chr1 (23-103)||(31057184-31057264)
chr1 (23-119)||(25382461-25382560)
chr1 (23-103)||(25161683-25161764)
chr1 (115-265)||(24963940-24964087)
chr1 (123-179)||(27954951-27955007)
[»] chr7 (23 HSPs)
chr7 (115-276)||(28421179-28421338)
chr7 (115-276)||(3811389-3811548)
chr7 (115-276)||(3817531-3817690)
chr7 (123-276)||(351575-351726)
chr7 (115-277)||(22742148-22742309)
chr7 (116-266)||(35148239-35148387)
chr7 (147-276)||(20238762-20238890)
chr7 (115-276)||(5849310-5849469)
chr7 (123-276)||(339169-339319)
chr7 (115-277)||(43539757-43539920)
chr7 (23-103)||(350936-351016)
chr7 (119-276)||(15843730-15843886)
chr7 (119-276)||(15860839-15860995)
chr7 (23-119)||(35148910-35149008)
chr7 (117-276)||(5979394-5979553)
chr7 (23-119)||(3812094-3812190)
chr7 (115-210)||(26383449-26383543)
chr7 (115-199)||(42767500-42767581)
chr7 (115-174)||(35152849-35152908)
chr7 (171-277)||(35150760-35150864)
chr7 (203-275)||(7608309-7608381)
chr7 (115-184)||(7608207-7608276)
chr7 (249-281)||(24690854-24690886)
[»] scaffold0012 (1 HSPs)
scaffold0012 (117-276)||(173110-173267)
[»] scaffold0440 (1 HSPs)
scaffold0440 (122-276)||(1414-1566)
[»] scaffold0363 (2 HSPs)
scaffold0363 (157-275)||(840-956)
scaffold0363 (15-119)||(3527-3631)
[»] scaffold1114 (2 HSPs)
scaffold1114 (115-211)||(843-938)
scaffold1114 (209-292)||(956-1039)
[»] scaffold0064 (1 HSPs)
scaffold0064 (115-179)||(14053-14117)
[»] scaffold0185 (1 HSPs)
scaffold0185 (115-188)||(5749-5821)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 32890668 - 32890828
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  32890668 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 32890766  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  32890767 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 32890828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 32896792 - 32896952
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  32896792 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 32896890  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  32896891 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 32896952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 5542540 - 5542380
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  5542540 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 5542442  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  5542441 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 5542380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 115 - 293
Target Start/End: Complemental strand, 22220107 - 22219931
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  22220107 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 22220009  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| ||| |||| | || ||||||||||||    
T  22220008 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccactaa-ctttattgtttgtttca 22219931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 36818752 - 36818911
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||| ||||||    
T  36818752 ccattaacggaataatgggaaaccctaatggctatcaaatataaaagaggctatggtccccaatataccgtacacggc-aaactctctcttct-ccccat 36818849  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || | ||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  36818850 ctgatgagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 36818911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 158 - 293
Target Start/End: Complemental strand, 39727645 - 39727511
Alignment:
Q  158 aaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagagtacttgagacataaaggtaccggtataggaagaac 257  Q
    ||||||| |||| |||||||||||||||||||  |||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||  |||||||||    
T  39727645 aaagaggatatggtccccaatataccgtacacaacaaaactctctcttctcccc-atctcaagagtacttgaggcataaaggtaccggttgaggaagaac 39727547  T
Q  258 caaatcagcagccgctaacccttgttgtttgtttca 293  Q
    |||||||||||||||||||||||| |||||||||||    
T  39727546 caaatcagcagccgctaacccttgctgtttgtttca 39727511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 10699809 - 10699969
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||| |||| |||||| ||||| | ||||    
T  10699809 ccattaacggagtaatgggaaaccctaatggtcatcaaatataaaagagactatggtccccaatataccgtacacggcaatactctctcttct-ctccat 10699907  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || | ||  ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  10699908 ctgacgaaaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 10699969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 42993380 - 42993223
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||| |||| |||||||||||||| |||| |||| |||||   |||| ||||||    
T  42993380 ccattaacggaataatgggaaaccctaatcgccatccaatataaaagaggttatggtccccaatataccgaacacggcaatactct---ttct-ccccat 42993285  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  42993284 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 42993223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 39728270 - 39728166
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   || ||||||||||||||||||||||||||||||||    
T  39728270 tcttttactttatgttctatacttttgttttggtattgatacatactttatgttatgattttccacagaaataaagttcatgaggttatgtttattataa 39728171  T
Q  115 ccatt 119  Q
     ||||    
T  39728170 tcatt 39728166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 115 - 277
Target Start/End: Original strand, 42033581 - 42033741
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||| ||||||||| ||||||||| |  |||||| || |||||||| ||||| | ||||    
T  42033581 ccattaacggaataatgggaaaccctaatggtcatccaatataaaggaggctatggtccccaatacattgtacacggc-aaactctctcttct-ctccat 42033678  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| ||||||||||    
T  42033679 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaacc 42033741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 10705618 - 10705777
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||| ||||||||||   ||||||||||||||||||||||| || ||||||||||||||||  ||| |||||| ||||| ||||||    
T  10705618 ccattaacggaataatgg-aaaccctaatagtcatcaaatataaaagaggctatggtctccaatataccgtacacgacaatactctctcttct-ccccat 10705715  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| |||| || |||||||||||||||  |||||||| ||||||||| |||||||||    
T  10705716 ctgaagagaacttaagccataaaggtaccggttgaggaagaatcaaatcagccgccgctaac 10705777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 10704969 - 10705073
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||| ||||||| |||||||| |||||||||||||||    
T  10704969 tcttttactttatgttctatacttttgttttggtaatgatacagactttatgttatgattttctgcagaaataaaattcatgagattatgtttattataa 10705068  T
Q  115 ccatt 119  Q
    |||||    
T  10705069 ccatt 10705073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 115 - 293
Target Start/End: Complemental strand, 39735918 - 39735751
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||||||||| || |         |||||||||  |||||||||| ||||||||| ||    
T  39735918 ccattaacggaataa-gggaaaccctaatggccatctaatataaaagaggctctggt---------accgtacacgacaaaactctctcttctcccc-at 39735830  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    || ||||||||||||| |||||| ||||| ||  |||||||| ||||||||| ||||||||||||||||||||||||||    
T  39735829 ctgaagagtacttgaggcataaatgtaccagttaaggaagaatcaaatcagccgccgctaacccttgttgtttgtttca 39735751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 115 - 275
Target Start/End: Original strand, 9935063 - 9935217
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||| ||||| ||||| || ||||||||||||||| ||||||||| |||||||||  ||||   ||| ||||||||| ||    
T  9935063 ccattaacggaataatgggaaacc-taatggccatccaa-ataaaagaggctatggtccccaatacaccgtacacgacaaa---ctctcttctcccc-at 9935156  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaa 275  Q
    || ||||| ||||||| ||||||||||||| |  |||||||||||||||||| ||||||||    
T  9935157 ctgaagagaacttgaggcataaaggtaccgattgaggaagaaccaaatcagccgccgctaa 9935217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 32896151 - 32896231
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    |||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||| |||||||||||||||||||||    
T  32896151 tttatgttctatacttttgttttgatattgatacagactttatgttatgattttctgcagaaataaagttcatgaggttat 32896231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 157 - 275
Target Start/End: Original strand, 14417763 - 14417879
Alignment:
Q  157 aaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagagtacttgagacataaaggtaccggtataggaagaa 256  Q
    ||||||||||||| ||||||||| ||||||||| ||||| ||||| ||||||||| |||| ||||| ||||||| |||||| ||||||||  ||||||||    
T  14417763 aaaagaggctatggtccccaatacaccgtacacggcaaa-ctctctcttctcccc-atctgaagagaacttgaggcataaacgtaccggttgaggaagaa 14417860  T
Q  257 ccaaatcagcagccgctaa 275  Q
    |||||||||| ||||||||    
T  14417861 ccaaatcagccgccgctaa 14417879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 14415080 - 14415184
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    ||||||| || ||||||||||||||||||||| ||| |||||| ||| ||| |||||||||| |||| |||||||||| |||||||||| ||| ||||||    
T  14415080 tcttttatttaatgttctatacttttgttttgatatcgatacagactatatgttatgattttctgcagaaataaagtttatgaggttatttttgttataa 14415179  T
Q  115 ccatt 119  Q
    |||||    
T  14415180 ccatt 14415184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 5543183 - 5543085
Alignment:
Q  23 tttatgttctatacttttg--ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataaccatt 119  Q
    ||||||||||||||||||   |||||| ||||||||| ||||||| |||||||||| |||| ||||||||||||||||||||| ||| |||||||||||    
T  5543183 tttatgttctatacttttaatttttggaattgatacagactttatgttatgattttctgcagaaataaagttcatgaggttatttttgttataaccatt 5543085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 1883151 - 1883038
Alignment:
Q  162 aggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagagtacttgagacataaaggtaccggtataggaagaaccaaa 261  Q
    |||||||| ||||||||| ||  ||||| ||||| || || ||||||||| |||| ||||| ||||||||||||||||||| |||  |||||||||||||    
T  1883151 aggctatggtccccaatacacaatacacggcaaa-ctttctcttctcccc-atctgaagagaacttgagacataaaggtactggttgaggaagaaccaaa 1883054  T
Q  262 tcagcagccgctaacc 277  Q
    | ||| ||||||||||    
T  1883053 ttagccgccgctaacc 1883038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 1171249 - 1171302
Alignment:
Q  240 taccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    |||||||  |||||||||||||||||| |||||||||| |||||||||||||||    
T  1171249 taccggttgaggaagaaccaaatcagccgccgctaaccgttgttgtttgtttca 1171302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 116 - 277
Target Start/End: Complemental strand, 26957182 - 26957022
Alignment:
Q  116 cattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatc 215  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| |||||||    
T  26957182 cattaacggaataatgggaaaccctaatggccatcaaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccatc 26957084  T
Q  216 taaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
    | ||||| ||||||| |||||||||||||||  |||||||||||||||||  ||||||||||    
T  26957083 tgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagtcgccgctaacc 26957022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 48160739 - 48160899
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  48160739 ccattaacggaataatgggaaaccctaatggccatcaaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 48160837  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| ||||||||||| |||  |||||||||||||| ||  |||||||||    
T  48160838 ctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaattagtcgccgctaac 48160899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 24287767 - 24287926
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||||||| ||    
T  24287767 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatg-tccccaatacaccgtacacggcaatactctctcttctcccc-at 24287864  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  24287865 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 24287926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 48166958 - 48167118
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  48166958 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 48167056  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| ||||||||||| |||  |||||||||||||| ||  |||||||||    
T  48167057 ctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaattagtcgccgctaac 48167118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 6257584 - 6257425
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||| |||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  6257584 ccattaacggaataatgg-aaaccctaatggtcatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 6257487  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  6257486 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 6257425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 116 - 276
Target Start/End: Complemental strand, 33461770 - 33461612
Alignment:
Q  116 cattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatc 215  Q
    ||||||||| ||||||||||||||| |||| |||| |||||||||||||||||| |||||||||||||||||| ||  |||||||| ||||| |||||||    
T  33461770 cattaacgggataatgggaaaccctgatgatcatccaatataaaagaggctatggtccccaatataccgtaca-cggtaaactctctcttct-ccccatc 33461673  T
Q  216 taaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    | || || ||||||| |||||||||||||||  |||||||| ||||||||| |||||||||    
T  33461672 tgaaaagaacttgaggcataaaggtaccggttgaggaagaatcaaatcagccgccgctaac 33461612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 26957831 - 26957727
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  26957831 tcttttactttatgttctacacttttgttttagtaatgatacagactttatgttatgattttctgcagaaataaagttcatgaggttatgtttattataa 26957732  T
Q  115 ccatt 119  Q
    |||||    
T  26957731 ccatt 26957727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 10733729 - 10733572
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||  ||||||||||| ||||||||| ||||||||| || |||||||| ||||| ||||||    
T  10733729 ccattaacggaataatgggaaaccctaatggccatccaatat--aagaggctatggtccccaatacaccgtacacggc-aaactctctcttct-ccccat 10733634  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| | ||||| |||||||||| ||||  |||||||||||||||||| | |||||||    
T  10733633 ctgaagagaatttgaggcataaaggtatcggttgaggaagaaccaaatcagccgtcgctaac 10733572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 10739716 - 10739559
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||  ||||||||| ||||||||| ||||||||| | ||| ||||| ||||||||| ||    
T  10739716 ccattaacggaataatgggaaaccctaatggccatccaatataa--gaggctatggtccccaatacaccgtacacggtaaa-ctctctcttctcccc-at 10739621  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| | ||||| |||||||||| ||||  |||||||||||||||||| |||||||||    
T  10739620 ctgaagagaatttgaggcataaaggtatcggttgaggaagaaccaaatcagccgccgctaac 10739559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 10947498 - 10947341
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||  ||||||||||| ||||||||| ||||||||| || |||||||| ||||| ||||||    
T  10947498 ccattaacggaataatgggaaaccctaatggccatccaatat--aagaggctatggtccccaatacaccgtacacggc-aaactctctcttct-ccccat 10947403  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| | ||||| |||||||||| ||||  |||||||||||||||||| | |||||||    
T  10947402 ctgaagagaatttgaggcataaaggtatcggttgaggaagaaccaaatcagccgtcgctaac 10947341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 10953485 - 10953328
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||  ||||||||| ||||||||| ||||||||| | ||| ||||| ||||||||| ||    
T  10953485 ccattaacggaataatgggaaaccctaatggccatccaatataa--gaggctatggtccccaatacaccgtacacggtaaa-ctctctcttctcccc-at 10953390  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| | ||||| |||||||||| ||||  |||||||||||||||||| |||||||||    
T  10953389 ctgaagagaatttgaggcataaaggtatcggttgaggaagaaccaaatcagccgccgctaac 10953328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 293
Target Start/End: Original strand, 50168375 - 50168550
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||| |||||||| |||||||||||  |||  |||||||||||||||||| ||||||||| |||||||| ||||||||||||  |||| | ||||    
T  50168375 ccattaacgaaataatggaaaaccctaatggtcattcaatataaaagaggctatggtccccaatacaccgtaca-cgcaaaactctcttttct-ctccat 50168472  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    || ||||| ||||||| |||||||||||| ||  ||||||||| |||||| | |||||||| |||||||||||||||||    
T  50168473 ctgaagagaacttgaggcataaaggtacc-gttgaggaagaactaaatcaaccgccgctaatccttgttgtttgtttca 50168550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 33458646 - 33458487
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||| ||||||| |||||||||| |  |||| |||||||||||||||||| |||||||||||||||||| ||  ||||| || ||||| ||||||    
T  33458646 ccattaacgaaataatgcgaaaccctaacggtcatccaatataaaagaggctatggtccccaatataccgtaca-cgacaaactttctcttct-ccccat 33458549  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||| ||||  || ||||||||||||||| |||||||||    
T  33458548 ctgaagagaacttgaggcataaaggtatcggttgagaaagaaccaaatcagccgccgctaac 33458487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 26971934 - 26971839
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccc 211  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||| |||| |||||| |||||||||    
T  26971934 ccattaacggaataatgg-aaaccctaatggccatccaatataaaagagactatggtccccaatataccgtacacggcaatactctctcttctcccc 26971839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 279
Target Start/End: Complemental strand, 44831994 - 44831836
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||| |||||||||||||  |||| |||||||||||||||||| |||||||||||||| ||||     ||||||| ||||| || |||    
T  44831994 ccattaacggaataattggaaaccctaatggtcatccaatataaaagaggctatggtccccaatataccgaacac-----aactctctcttct-ccgcat 44831901  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaaccct 279  Q
    |  ||||| ||||||| ||||||  |||||||  ||||||||||| |||||| | ||||||||||    
T  44831900 ccgaagagaacttgaggcataaaaataccggttgaggaagaaccacatcagccgtcgctaaccct 44831836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 48166318 - 48166414
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataaccatt 119  Q
    ||||||||||||| |||||||||| |||||||||| ||||||| |||||||||| |||| ||||||| |||||||||||||  || |||||||||||    
T  48166318 tttatgttctatatttttgttttgatattgatacagactttatgttatgattttctgcagaaataaaattcatgaggttattattgttataaccatt 48166414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 17627743 - 17627652
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    |||| ||||||||||||||||||||||| |||||| || |||| |||||||||| | || ||||||||||||||||||||||||| ||||||    
T  17627743 tttaagttctatacttttgttttggtatcgatacagacgttatgttatgattttctacaaaaataaagttcatgaggttatgtttgttataa 17627652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 10734371 - 10734273
Alignment:
Q  23 tttatgttctatacttttg--ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataaccatt 119  Q
    ||||||||||||||||||   |||||| ||||||||| ||||||| |||||||||| |||| || |||||||||||||||||| ||| |||||||||||    
T  10734371 tttatgttctatacttttaatttttggaattgatacagactttatgttatgattttctgcagaagtaaagttcatgaggttatttttgttataaccatt 10734273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 10948140 - 10948042
Alignment:
Q  23 tttatgttctatacttttg--ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataaccatt 119  Q
    ||||||||||||||||||   |||||| ||||||||| ||||||| |||||||||| |||| || |||||||||||||||||| ||| |||||||||||    
T  10948140 tttatgttctatacttttaatttttggaattgatacagactttatgttatgattttctgcagaagtaaagttcatgaggttatttttgttataaccatt 10948042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 293
Target Start/End: Original strand, 50155738 - 50155914
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||| | ||||| |||||| |||||| |||| ||||||||||| | |||| ||||||||| |||||||| |||||||||||| |||   || |||    
T  50155738 ccattaacgaactaatgagaaaccataatgatcatccaatataaaagaagttatggtccccaatacaccgtaca-cgcaaaactctctctttctcctcat 50155836  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    || || || |||| || |||||||||||| ||  || ||||| ||||||||| ||||||||   |||||||||||||||    
T  50155837 ctgaaaagaacttaaggcataaaggtaccagtcgagaaagaatcaaatcagccgccgctaa-tattgttgtttgtttca 50155914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 280
Target Start/End: Original strand, 49976382 - 49976528
Alignment:
Q  125 aataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagagta 224  Q
    |||||||| ||||||||||| ||||| ||||||||||||| |||| || |||     |||||||| ||||| ||||| ||||||||| |||| ||||| |    
T  49976382 aataatggaaaaccctaatggccatccaatataaaagaggttatggtctcca-----ccgtacacggcaaa-ctctctcttctcccc-atctgaagagaa 49976474  T
Q  225 cttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaaccctt 280  Q
    |||||| ||||||| ||||| |  |||||||||||||||||| |||||||||||||    
T  49976475 cttgaggcataaag-taccgttg-aggaagaaccaaatcagccgccgctaaccctt 49976528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 50167731 - 50167829
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttca--tgaggttatgtttattataaccatt 119  Q
    |||||||||||| ||||||||||||||||| |||| ||| ||| |||||||||| |||| ||||||||||||   |||||||| ||| |||||||||||    
T  50167731 tttatgttctatgcttttgttttggtattgttacagactgtatgttatgattttctgcagaaataaagttcacgagaggttatatttgttataaccatt 50167829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 4632192 - 4632321
Alignment:
Q  146 ccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagagtacttgagacataaaggtaccgg 245  Q
    ||||| ||||||||||||| |||| |||||||||||| |||||   ||| ||| || ||||| | | |||| ||||| ||||||| ||||||| ||||||    
T  4632192 ccatccaatataaaagaggttatggtccccaatatacagtacatgacaatactttctcttcttctc-atctgaagagaacttgaggcataaagataccgg 4632290  T
Q  246 tataggaagaaccaaatcagcagccgctaac 276  Q
    |  ||||||||||||||||| ||||||||||    
T  4632291 ttgaggaagaaccaaatcagaagccgctaac 4632321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 17627154 - 17627080
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacac 189  Q
    |||||||||||||||| | |||||||||||    | ||||||||||||||| ||||||||||||| || ||||||    
T  17627154 ccattaacggaataattgaaaaccctaatggttgttaaatataaaagaggccatgatccccaatacacagtacac 17627080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 19686697 - 19686644
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctat 168  Q
    ||||||||| ||||||| ||||||||| |||||||| |||||||||||| ||||    
T  19686697 ccattaacgaaataatgagaaaccctactgaccatccaatataaaagagactat 19686644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 35177578 - 35177650
Alignment:
Q  117 attaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacac 189  Q
    ||||| ||||||||| ||||||||||||  |||| ||||||||||||| |||  ||| ||||| |||||||||    
T  35177578 attaaaggaataatgagaaaccctaatggtcatccaatataaaagaggttatagtcctcaatacaccgtacac 35177650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 10769349 - 10769189
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  10769349 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 10769251  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  10769250 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 10769189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 11840105 - 11839945
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  11840105 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 11840007  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  11840006 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 11839945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 38449443 - 38449283
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  38449443 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 38449345  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  38449344 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 38449283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 38455930 - 38455770
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  38455930 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 38455832  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  38455831 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 38455770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 10238592 - 10238432
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  10238592 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 10238494  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||| ||||||||  |||||||||||||||||| |||||||||    
T  10238493 ctgaagagaacttgaggcataaatgtaccggttgaggaagaaccaaatcagccgccgctaac 10238432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 10244714 - 10244554
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  10244714 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 10244616  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||| ||||||||  |||||||||||||||||| |||||||||    
T  10244615 ctgaagagaacttgaggcataaatgtaccggttgaggaagaaccaaatcagccgccgctaac 10244554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 10761030 - 10760870
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||  ||| |||||| ||||| ||||||    
T  10761030 ccattaacggaataatgggaaaccctaatgaccatccaatataaaagaggctatggtccccaatataccgtacacgacaatactctctcttct-ccccat 10760932  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| ||||||||||| |||  |||||||||||||||||  |||||||||    
T  10760931 ctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaatcagtcgccgctaac 10760870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 42191600 - 42191440
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  42191600 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 42191502  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  ||||||||||||||||||  ||||||||    
T  42191501 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccaccgctaac 42191440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 42197542 - 42197382
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  42197542 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 42197444  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  ||||||||||||||||||  ||||||||    
T  42197443 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccaccgctaac 42197382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 115 - 274
Target Start/End: Complemental strand, 26429797 - 26429639
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| | |||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  26429797 ccattaacggaataatgggaaaccctaatggtcatccagtataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 26429699  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgcta 274  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||    
T  26429698 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgcta 26429639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 8331567 - 8331726
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||| || |||||| || |||||||| ||||| ||||||    
T  8331567 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccccaatacactgtacacggc-aaactctctcttct-ccccat 8331664  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  8331665 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 8331726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 117 - 276
Target Start/End: Complemental strand, 17056170 - 17056013
Alignment:
Q  117 attaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatct 216  Q
    ||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||| | ||||||| || |||||||| ||||| ||||||||    
T  17056170 attaacggaataatgggaaaccctaatggacatccaatataaaagaggctatggtccccaatacatcgtacacggc-aaactctctcttct-ccccatct 17056073  T
Q  217 aaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
     ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  17056072 gaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 17056013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 49151392 - 49151551
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||  || |||||||| ||||| ||||||    
T  49151392 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacatggc-aaactctctcttct-ccccat 49151489  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| || |||| |||||||||||||||  |||||||| |||||||||  ||||||||    
T  49151490 ctgaagagaacgtgaggcataaaggtaccggttgaggaagaatcaaatcagccaccgctaac 49151551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 49157459 - 49157618
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||  || |||||||| ||||| ||||||    
T  49157459 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacatggc-aaactctctcttct-ccccat 49157556  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| || |||| |||||||||||||||  |||||||| |||||||||  ||||||||    
T  49157557 ctgaagagaacgtgaggcataaaggtaccggttgaggaagaatcaaatcagccaccgctaac 49157618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 30051480 - 30051322
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| || |||||||| |||||  |||||    
T  30051480 ccattaacggaataatgg-aaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacacggc-aaactctctcttct-gcccat 30051384  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||| ||||||||| | |||||||    
T  30051383 ctgaagagaacttgaggcataaaggtaccggttgaggaagaatcaaatcagccgtcgctaac 30051322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 279
Target Start/End: Original strand, 13444840 - 13445000
Alignment:
Q  118 ttaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatcta 217  Q
    |||||| |||||||||||||||||||| ||||| ||||||||| ||| |||| ||||||||| |||||||||  | | | |||| ||||| ||||||||     
T  13444840 ttaacgaaataatgggaaaccctaatggccatccaatataaaataggttatggtccccaatacaccgtacacaacgatattctctcttct-ccccatctg 13444938  T
Q  218 aagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaaccct 279  Q
    ||||| ||||||| |||||| ||| ||||  |||||||||||||||||| ||| ||||||||    
T  13444939 aagagaacttgaggcataaaagtatcggttgaggaagaaccaaatcagccgccactaaccct 13445000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 115 - 293
Target Start/End: Original strand, 28964660 - 28964828
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||| ||||||||||||  |||| |||||||||||||||||| |||||||||||||||||| || ||||||||| ||||| ||||||    
T  28964660 ccattaacggaataatgagaaaccctaatggtcatccaatataaaagaggctatggtccccaatataccgtaca-cggaaaactctctcttct-ccccat 28964757  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    || ||||| ||| ||| |||        ||||  |||||||||||||| ||| ||||||||| |||  |||||||||||    
T  28964758 ctgaagagaactcgaggcat--------cggttgaggaagaaccaaattagccgccgctaacactttatgtttgtttca 28964828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 290
Target Start/End: Complemental strand, 48128419 - 48128247
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||| ||||| |||||  |||| |||||||||||||||||| ||||||||||||||||||| || ||||  || ||||| |||  |    
T  48128419 ccattaacggaataatggaaaaccttaatggtcatccaatataaaagaggctatggtccccaatataccgtacacggc-aaacattctcttct-ccctgt 48128322  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtt 290  Q
    || ||||| |||  || |||||||||||| ||  |||||||||||||||||| || ||||| | ||||||||||||    
T  48128321 ctgaagagaactaaaggcataaaggtaccagttgaggaagaaccaaatcagccgctgctaa-cattgttgtttgtt 48128247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 13367216 - 13367135
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaac 197  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||  |||||||    
T  13367216 ccattaacggaataatgggaaaccctaatgaccatccaatat-aaagaggctatggtccccaatataccgtacatagcaaaac 13367135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 24644518 - 24644414
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    ||||||| ||||||||||||||||| |||||||||| |||||| |||||||  ||||||||| ||||||||||||||| || |||||||  || ||||||    
T  24644518 tcttttattttatgttctatactttagttttggtatcgatacagactttatgctatgattttctgcataaataaagtttataaggttattattgttataa 24644419  T
Q  115 ccatt 119  Q
    |||||    
T  24644418 ccatt 24644414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 49156818 - 49156898
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    |||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||| ||||||| |||||||||||||    
T  49156818 tttatgttctatacttttgttttgatattgatacagactttatgttatgattttctgcagaaataaaattcatgaggttat 49156898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 10761676 - 10761574
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    ||||||| ||||||||||||||||| ||||| |||| |||||| |||||||  ||||||||| |||| ||||||||||||| ||||||| ||| ||||||    
T  10761676 tcttttattttatgttctatacttt-gttttagtatcgatacagactttatggtatgattttctgcagaaataaagttcataaggttat-tttgttataa 10761579  T
Q  115 ccatt 119  Q
    |||||    
T  10761578 ccatt 10761574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 11840750 - 11840651
Alignment:
Q  23 tttatgttctatacttttg--ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggtta-tgtttattataaccatt 119  Q
    ||||||||||||||||||   |||||| ||||||||| ||||||| |||||||||| |||| |||||||||||||||||||| | ||| |||||||||||    
T  11840750 tttatgttctatacttttaatttttggaattgatacagactttatgttatgattttctgcagaaataaagttcatgaggttattttttgttataaccatt 11840651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 42192245 - 42192146
Alignment:
Q  23 tttatgttctatacttttg--ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggtta-tgtttattataaccatt 119  Q
    ||||||||||||||||||   |||||| ||||||||| ||||||| |||||||||| |||| |||||||||||||||||||| | ||| |||||||||||    
T  42192245 tttatgttctatacttttaatttttggaattgatacagactttatgttatgattttctgcagaaataaagttcatgaggttattttttgttataaccatt 42192146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 276
Target Start/End: Complemental strand, 55003756 - 55003632
Alignment:
Q  147 catcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagagtacttgagacataaaggtaccggt 246  Q
    |||| ||||||||||||| |||| |||||||||||||||||| ||  |||||||| ||||| |||||||| ||||| ||||||| ||||||||||||| |    
T  55003756 catccaatataaaagaggttatggtccccaatataccgtaca-cgacaaactctctcttct-ccccatctgaagagaacttgaggcataaaggtaccgat 55003659  T
Q  247 ataggaagaaccaaatcagcagccgctaac 276  Q
        || ||||||||||||| |||||||||    
T  55003658 ---tgaggaaccaaatcagccgccgctaac 55003632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 38450087 - 38449987
Alignment:
Q  23 tttatgttctatacttttg---ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggtta-tgtttattataaccat 118  Q
    ||||||||||||||||||    |||||| ||||||||| ||||||| |||||||||| |||| |||||||||||||||||||| | ||| ||||||||||    
T  38450087 tttatgttctatacttttaattttttggaattgatacagactttatgttatgattttctgcagaaataaagttcatgaggttattttttgttataaccat 38449988  T
Q  119 t 119  Q
    |    
T  38449987 t 38449987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 13837534 - 13837613
Alignment:
Q  196 actctcccttctcccccatctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    |||||| ||||||||| |||| ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  13837534 actctctcttctcccc-atctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 13837613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 53069430 - 53069278
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatat--aaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctccccc 212  Q
    |||||||| |||||||||||||||||||||| | || |||||  ||||||||||||| ||| ||||| ||||||||  || |||||||| ||||| ||||    
T  53069430 ccattaacagaataatgggaaaccctaatgatcgtccaatataaaaaagaggctatggtcctcaatacaccgtacatggc-aaactctctcttct-cccc 53069333  T
Q  213 atctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
    |||| ||||| |||          ||||||||||  |||||||||||||||||| ||||||||||    
T  53069332 atctgaagagaact----------aggtaccggttgaggaagaaccaaatcagccgccgctaacc 53069278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 10239231 - 10239137
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataaccatt 119  Q
    |||||||||||||||||  |||| |||| |||||| |||||||  ||||||||| |||| ||||||||||||| ||||||| ||| |||||||||||    
T  10239231 tttatgttctatacttta-ttttagtatcgatacagactttatggtatgattttctgcagaaataaagttcataaggttat-tttgttataaccatt 10239137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 9760498 - 9760570
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtaca 188  Q
    ||||||| |||||||| |||||||||||||  |||| ||||| ||||||| |||| ||||||||||||||||||    
T  9760498 ccattaaaggaataataggaaaccctaatggtcatccaatat-aaagaggatatggtccccaatataccgtaca 9760570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 24643815 - 24643756
Alignment:
Q  234 taaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    |||||||||||||  || ||||||||||||||| |||||||||| ||| |||||||||||    
T  24643815 taaaggtaccggttgagaaagaaccaaatcagccgccgctaaccgttgatgtttgtttca 24643756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 12108943 - 12108873
Alignment:
Q  224 acttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttcat 294  Q
    ||||||| |||||||||||||||  | |||||||||||||||  ||||||||||  |||||| ||||||||    
T  12108943 acttgaggcataaaggtaccggttaaagaagaaccaaatcagtcgccgctaacctatgttgtgtgtttcat 12108873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 46656462 - 46656531
Alignment:
Q  117 attaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgta 186  Q
    ||||||||||||||||||||||||| ||   ||| ||||||||||||| |||| | ||||||| ||||||    
T  46656462 attaacggaataatgggaaaccctattggttatccaatataaaagaggttatggttcccaatacaccgta 46656531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 115 - 279
Target Start/End: Complemental strand, 35085059 - 35084896
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  35085059 ccattaacggaataatgggaaaccctaatggctatccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 35084961  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaaccct 279  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| ||||||||||||    
T  35084960 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaaccct 35084896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 115 - 279
Target Start/End: Complemental strand, 35091032 - 35090869
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  35091032 ccattaacggaataatgggaaaccctaatggctatccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 35090934  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaaccct 279  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| ||||||||||||    
T  35090933 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaaccct 35090869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 13455879 - 13456039
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  13455879 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 13455977  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  ||||||||||||||||||  ||||||||    
T  13455978 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccaccgctaac 13456039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 13461820 - 13461980
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  13461820 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 13461918  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  ||||||||||||||||||  ||||||||    
T  13461919 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccaccgctaac 13461980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 44717185 - 44717025
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |||| ||| || ||||| ||||||    
T  44717185 ccattaacggaataatggaaaaccctaatgaccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactatctcttct-ccccat 44717087  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  44717086 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 44717025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 115 - 266
Target Start/End: Complemental strand, 28683324 - 28683175
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| || |||||||| ||||| ||||||    
T  28683324 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacacggc-aaactctctcttct-ccccat 28683227  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagc 266  Q
    || ||||| ||||||| |||||||||||||||  ||||||||||||||||||    
T  28683226 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagc 28683175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 30965107 - 30965267
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| |||||||||||||||||||  ||| |||||| ||||| ||||||    
T  30965107 ccattaacggaataatgggaaatcctaatggccatctaatataaaagaggctatggtccccaatataccgtacacgacaatactctctcttct-ccccat 30965205  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||| ||  |||||||||    
T  30965206 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaattagtcgccgctaac 30965267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 31002156 - 31002316
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||  ||| |||||| ||||| ||||||    
T  31002156 ccattaacggaataatgggaaaccataatggccatccaatataaaagaggctatggtccccaatataccgtacacaacaatactctctcttct-ccccat 31002254  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||| ||  |||||||||    
T  31002255 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaattagtcgccgctaac 31002316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 36750194 - 36750354
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || |||||| |||||||||  ||| |||||| ||||| ||||||    
T  36750194 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtctccaatacaccgtacacgacaatactctctcttct-ccccat 36750292  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| ||||||| |||||||  |||||||||||||||||| |||||||||    
T  36750293 ctgaagagaacttgaggcataaagataccggttgaggaagaaccaaatcagccgccgctaac 36750354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 31008134 - 31008294
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||  ||| |||||| ||||| ||||||    
T  31008134 ccattaacggaataatgggaaaccataatggccatccaatataaaagaggctatggtccccaatataccgtacacaacaatactctctcttct-ccccat 31008232  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||| ||||||||  |||||||||||||| ||  |||||||||    
T  31008233 ctgaagagaacttgaggcataaaagtaccggttgaggaagaaccaaattagtcgccgctaac 31008294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 13150069 - 13149904
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcc----c 210  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||||||| |||| ||||||||||||||||||| |||| | |||| |||||||    |    
T  13150069 ccattaacggaataatgggaaaccctaatggtcatctaatataaaagaggttatggtccccaatataccgtacacggcaatattctctcttctcctcatc 13149970  T
Q  211 ccatctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
     ||||| ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  13149969 tcatctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 13149904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 35440397 - 35440294
Alignment:
Q  16 cttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataac 115  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  35440397 cttttactttatgttctacacttttgttttggtaatgatacaaactttatgttatgattttctgcagaaataaagttcatgaggttatgtttattataac 35440298  T
Q  116 catt 119  Q
    ||||    
T  35440297 catt 35440294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 115 - 277
Target Start/End: Original strand, 23343335 - 23343494
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| ||  |||||||| ||||| ||||||    
T  23343335 ccattaacagaataatgg-aaaccctaatgaccatccaatataaaagaggctatggtccccaatacaccgtaca-cgggaaactctctcttct-ccccat 23343431  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
    || ||||| ||||||| |||||||||| ||||  |||||||||||||||||| || |||||||    
T  23343432 ctgaagagaacttgaggcataaaggtatcggttgaggaagaaccaaatcagccgctgctaacc 23343494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 11048934 - 11048785
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaa---aactctcccttctcccc 211  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||||||||||| ||||||||| | ||||||| ||||   ||||||| ||||| |||    
T  11048934 ccattaacggaataatgggaaaccctaatggcgatccaatataaaagaggctatggtccccaatacatcgtacacggcaaaccaactctctcttct-ccc 11048836  T
Q  212 catctaaagagtacttgagacataaaggtaccggtataggaagaaccaaat 262  Q
    ||||| ||||| ||||||| |||||||||||| ||  ||||||||||||||    
T  11048835 catctgaagagaacttgaggcataaaggtaccagttgaggaagaaccaaat 11048785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 23342705 - 23342809
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    ||||||| |||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||    
T  23342705 tcttttattttatgttatatacttttgttttggtattgatacagaatttatgttatgattttatgtagaaataaagttcatgaggttatgtttgttataa 23342804  T
Q  115 ccatt 119  Q
    |||||    
T  23342805 ccatt 23342809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 35439750 - 35439671
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaa 194  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||    
T  35439750 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacacggcaa 35439671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 28683963 - 28683883
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    |||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||| |||||||||||||||||||||    
T  28683963 tttatgttctatacttttgttttgatattgatacagactttatgttatgattttctgcagaaataaagttcatgaggttat 28683883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 35085700 - 35085620
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    |||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||| |||||||||||||||||||||    
T  35085700 tttatgttctatacttttgttttgatattgatacagactttatgttatgattttctgcagaaataaagttcatgaggttat 35085620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 35439006 - 35438908
Alignment:
Q  194 aaactctcccttctcccccatctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    |||||||| ||||||||| |||| ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||| ||| |||||||||||    
T  35439006 aaactctctcttctcccc-atctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaaccgttgatgtttgtttca 35438908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 274
Target Start/End: Original strand, 19879374 - 19879536
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaat-----ataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcc 209  Q
    |||||||||||||||||||||| | ||||| ||||| |||     |||||||||| |||| || |||||| | ||||||| ||||||||||| ||||| |    
T  19879374 ccattaacggaataatgggaaa-cttaatggccatccaatataacataaaagaggttatggtcgccaatacatcgtacacggcaaaactctctcttct-c 19879471  T
Q  210 cccatctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgcta 274  Q
    ||||||| ||||| ||||||| ||||||||||||| |  | |||||| ||||||||| |||||||    
T  19879472 cccatctgaagagaacttgaggcataaaggtaccgattgaagaagaatcaaatcagccgccgcta 19879536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 13461175 - 13461274
Alignment:
Q  23 tttatgttctatacttttg--ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggtta-tgtttattataaccatt 119  Q
    ||||||||||||||||||   |||||| ||||||||| ||||||| |||||||||| |||| |||||||||||||||||||| | ||| |||||||||||    
T  13461175 tttatgttctatacttttaatttttggaattgatacagactttatgttatgattttctgcagaaataaagttcatgaggttattttttgttataaccatt 13461274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 25232637 - 25232701
Alignment:
Q  55 acatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataaccatt 119  Q
    ||||| ||||| ||||||||||||||||||||||||||||||  |||||  || |||||||||||    
T  25232637 acataatttatgttatgattttatgcataaataaagttcatgttgttattattgttataaccatt 25232701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 23284725 - 23284772
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaaga 162  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  23284725 ccattaacggaataatgtgaaactctaatggccatcaaatataaaaga 23284772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 29479766 - 29479684
Alignment:
Q  22 ctttatgttctatacttttgttttgg-tattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    ||||||||| || ||||||||||| | |||||||||||||||||  || ||||||| || | |||||||||||||||| ||||    
T  29479766 ctttatgttttaaacttttgtttttgatattgatacatactttacgttgtgattttctgtagaaataaagttcatgagtttat 29479684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 25760101 - 25760021
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    ||||||||||| | |||||||||| |||  ||||||||||||  || ||||||  || | |||||||||||||||||||||    
T  25760101 tttatgttctaaatttttgttttgatatcaatacatactttacgttgtgatttgctgtagaaataaagttcatgaggttat 25760021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 29034697 - 29034764
Alignment:
Q  213 atctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaaccctt 280  Q
    |||| ||||| |||||||||||||||||||| ||  |||||||| |||||||||  ||||||| ||||    
T  29034697 atctgaagagaacttgagacataaaggtaccagttgaggaagaatcaaatcagccaccgctaatcctt 29034764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 6302 - 6462
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  6302 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 6400  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  6401 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 6462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 12175 - 12335
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  12175 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 12273  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  12274 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 12335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 30282 - 30386
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    ||||||||||||||||||| ||||||||||||||| ||||| | ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  30282 tcttttactttatgttctacacttttgttttggtaatgatatagactttatgttatgattttctgcagaaataaagttcatgaggttatgtttattataa 30381  T
Q  115 ccatt 119  Q
    |||||    
T  30382 ccatt 30386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 11519 - 11604
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggtt 101  Q
    ||||||| ||||||||||||| ||||||||| | || |||||| |||||||  ||||||||| |||| ||||||||||||| |||||    
T  11519 tcttttattttatgttctata-ttttgttttagaatcgatacagactttatggtatgattttctgcagaaataaagttcataaggtt 11604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 8651183 - 8651023
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  8651183 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 8651085  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  8651084 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 8651023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 4580701 - 4580541
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  4580701 ccattaatggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 4580603  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  4580602 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 4580541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 114 - 277
Target Start/End: Complemental strand, 21770946 - 21770786
Alignment:
Q  114 accattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctccccca 213  Q
    ||||||||||||||||||||||||||||||| ||| | |||||||||||||||| | ||||||||| ||||||||| ||||||||||| |||||   |||    
T  21770946 accattaacggaataatgggaaaccctaatggccaaccaatataaaagaggctacggtccccaatacaccgtacacggcaaaactctctcttct---cca 21770850  T
Q  214 tctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
    ||| ||||| ||||||| |||||||||||||||  |||||||||||||||||| || |||||||    
T  21770849 tctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgctgctaacc 21770786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 25343405 - 25343564
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||| |||||||||  ||| |||||| ||||||||| ||    
T  25343405 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatg-tccccaatacaccgtacacgacaatactctctcttctcccc-at 25343502  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  25343503 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 25343564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 25353991 - 25354151
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||| ||||||  |||| |||||||||||||||||| ||||||||| |||||||||  ||| |||||| ||||| ||||||    
T  25353991 ccattaacggaataatgggaaactctaatggtcatctaatataaaagaggctatggtccccaatacaccgtacacgacaatactctctcttct-ccccat 25354089  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  25354090 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 25354151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 21191249 - 21191086
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||| |||||| ||||| ||||| |||||||||||||||||| ||||||||||||| ||||| |||| |||||| ||||| ||||||    
T  21191249 ccattaacggaataatgtgaaaccataatggccatccaatataaaagaggctatggtccccaatataccttacacggcaatactctctcttct-ccccat 21191151  T
Q  215 ctaaagagtact---tgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| |||   |||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  21191150 ctgaagagaacttgatgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 21191086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 21197420 - 21197249
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtaca----------ccgcaaaactctccct 204  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||          | |||| |||||| ||    
T  21197420 ccattaacggaataatgggaaaacctaatggccatccaatataaaagaggctatggtccccaatataccgtacacggcaatactcggcaatactctctct 21197321  T
Q  205 tctcccccatctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
    ||| |||||||| ||||| ||||||| ||||||| |||||||  |||||||||||||||||| ||||||||||    
T  21197320 tct-ccccatctgaagagaacttgaggcataaagataccggttgaggaagaaccaaatcagccgccgctaacc 21197249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 279
Target Start/End: Complemental strand, 31756591 - 31756437
Alignment:
Q  123 ggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagag 222  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |  ||| ||  |||||||| ||||| |||||||| |||||    
T  31756591 ggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatatatcaaaca-cgacaaactctctcttct-ccccatctgaagag 31756494  T
Q  223 tacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaaccct 279  Q
     |||||||  ||||||||||| ||  |||||||||||||||||| ||||||||||||    
T  31756493 aacttgaggtataaaggtacctgttgaggaagaaccaaatcagccgccgctaaccct 31756437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 241
Target Start/End: Complemental strand, 21783705 - 21783579
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatg--atccccaatataccgtacaccgcaaaactctcccttctccccc 212  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||||||||||||   ||||||||| ||||||||| ||||||||||| ||||| ||||    
T  21783705 ccattaacggaataatgggaaaccctaatg-gcatccaatataaaagaggctatggtgtccccaatacaccgtacacggcaaaactctctcttct-cccc 21783608  T
Q  213 atctaaagagtacttgagacataaaggta 241  Q
    |||| ||||| ||||||| ||||||||||    
T  21783607 atctgaagagaacttgaggcataaaggta 21783579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 241
Target Start/End: Complemental strand, 21789928 - 21789802
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatg--atccccaatataccgtacaccgcaaaactctcccttctccccc 212  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||||||||||||   ||||||||| ||||||||| ||||||||||| ||||| ||||    
T  21789928 ccattaacggaataatgggaaaccctaatg-gcatccaatataaaagaggctatggtgtccccaatacaccgtacacggcaaaactctctcttct-cccc 21789831  T
Q  213 atctaaagagtacttgagacataaaggta 241  Q
    |||| ||||| ||||||| ||||||||||    
T  21789830 atctgaagagaacttgaggcataaaggta 21789802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 293
Target Start/End: Original strand, 17581416 - 17581589
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||| |||| ||| || |||||||||||||||||| |||||||   || ||||||  |||||||||| ||||||||| ||    
T  17581416 ccattaacggaataatgggaaacc-taataaccgtccaatataaaagaggctatggtccccaa---actgtacacgacaaaactctctcttctcccc-at 17581510  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    || ||||| ||||||| |||||| ||||  ||  |||||||||||||||||| ||| |||||| ||| |||||| ||||    
T  17581511 ctgaagagaacttgaggcataaatgtacaagttgaggaagaaccaaatcagctgccactaaccgttgatgtttgcttca 17581589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 17580765 - 17580869
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    |||||||  ||| |||||||||||| |||||||||| |||||| ||||||| |||||||||| |||| ||||||||||||||| || |||||| ||||||    
T  17580765 tcttttatcttaagttctatactttagttttggtatcgatacaaactttatgttatgattttctgcagaaataaagttcatgaagtgatgtttgttataa 17580864  T
Q  115 ccatt 119  Q
    |||||    
T  17580865 ccatt 17580869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 32030487 - 32030407
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    |||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||| ||||||| |||||||||||||    
T  32030487 tttatgttctatacttttgttttgatattgatacagactttatgttatgattttctgcagaaataaaattcatgaggttat 32030407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 28728064 - 28728145
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaac 197  Q
    |||||||||||||||||||||||||||||| |||||  |||| || ||||||||| ||||||||||||||||||| |||||||    
T  28728064 ccattaacggaataatgggaaaccctaatggccatcctatat-aatgaggctatggtccccaatataccgtacacagcaaaac 28728145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 21191892 - 21191794
Alignment:
Q  23 tttatgttctatacttttg--ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataaccatt 119  Q
    ||||||||||||||||||   |||||| ||||||||| ||||||| |||||||||| |||| ||||||||||| | ||||||| ||| |||||||||||    
T  21191892 tttatgttctatacttttaatttttggaattgatacagactttatgttatgattttctgcagaaataaagttcgtaaggttatttttgttataaccatt 21191794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 6102637 - 6102687
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttat 65  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6102637 tcttttactttatgttctatacttttgttttggtattgatacaaactttat 6102687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 30905957 - 30905841
Alignment:
Q  118 ttaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatcta 217  Q
    ||||| ||||||||||||||| |||||  |||| |||||||||||||||||| | ||||||| |||||||  ||  |||||||| ||  ||||||||||     
T  30905957 ttaacagaataatgggaaaccataatggtcatccaatataaaagaggctatggttcccaatacaccgtac-tcgacaaactctctct--tcccccatctg 30905861  T
Q  218 aagagtacttgagacataaa 237  Q
    ||||| ||||||| ||||||    
T  30905860 aagagaacttgaggcataaa 30905841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 8651826 - 8651727
Alignment:
Q  23 tttatgttctatacttttg---ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggtta-tgtttattataaccat 118  Q
    ||||||||||||||||||    |||||| ||||||||| ||||||| |||||||||| |||| || ||||||||||||||||| | ||| ||||||||||    
T  8651826 tttatgttctatacttttaattttttggaattgatacagactttatgttatgattttctgcagaa-taaagttcatgaggttattttttgttataaccat 8651728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 21771587 - 21771488
Alignment:
Q  23 tttatgttctatacttttg--ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggtta-tgtttattataaccatt 119  Q
    ||||||||||||||||||   |||||  ||||||| | ||||||| |||||||||| |||| |||||||||||||||| ||| | ||| |||||||||||    
T  21771587 tttatgttctatacttttaatttttgaaattgatatagactttatgttatgattttctgcagaaataaagttcatgagattattttttgttataaccatt 21771488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 17901276 - 17901196
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcat 95  Q
    ||||||| |||| |||| ||||| |||||| | ||| |||||| ||||||| |||||||| | |||||| |||||||||||    
T  17901276 tcttttattttaagttcaatactgttgtttggatatcgatacaaactttatgttatgattctctgcatatataaagttcat 17901196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 12801675 - 12801646
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatg 144  Q
    ||||||||||||||||||||||||||||||    
T  12801675 ccattaacggaataatgggaaaccctaatg 12801646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 13006846 - 13006899
Alignment:
Q  42 ttttggtattgatacatactttatattatgattttatgcataaataaagttcat 95  Q
    ||||| ||| |||||| ||||||| |||| |||||||||| |||||||||||||    
T  13006846 ttttgttatcgatacagactttatgttataattttatgcagaaataaagttcat 13006899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 12686558 - 12686399
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| || |||||||| ||||| ||||||    
T  12686558 ccattaacggaataatgggaaaccctaatggccatcaaatataaaagaggctatggtccccaatacaccgtacacggc-aaactctctcttct-ccccat 12686461  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  12686460 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 12686399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 12692660 - 12692501
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| || |||||||| ||||| ||||||    
T  12692660 ccattaacggaataatgggaaaccctaatggccatcaaatataaaagaggctatggtccccaatacaccgtacacggc-aaactctctcttct-ccccat 12692563  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  12692562 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 12692501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 7389927 - 7389767
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||||||||||||| | |||||||||| |||||| ||||||||||| ||||| ||||||    
T  7389927 ccattaacggaataatgggaaactctaatggccatccaatataaaagaggctatggttcccaatatactgtacacggcaaaactctctcttct-ccccat 7389829  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||  |||||||||    
T  7389828 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagtcgccgctaac 7389767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 32094601 - 32094441
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |||| |||||||||  ||| |||||| ||||| ||||||    
T  32094601 ccattaacggaataatgggaaaccctaatggccatctaatataaaagaggctatggtcccaaatacaccgtacacgacaatactctctcttct-ccccat 32094503  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||| ||| |||||||||    
T  32094502 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaattagccgccgctaac 32094441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 32097402 - 32097242
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| | || ||||||  |||| ||||||    
T  32097402 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggaaatactctctattct-ccccat 32097304  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  ||||||||| |||||||| |||||||||    
T  32097303 ctgaagagaacttgaggcataaaggtaccggttgaggaagaactaaatcagccgccgctaac 32097242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 115 - 266
Target Start/End: Complemental strand, 28525765 - 28525616
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||  || |||||||| ||||| ||||||    
T  28525765 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacatggc-aaactctctcttct-ccccat 28525668  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagc 266  Q
    || ||||| || |||| |||||||||||||||  |||||||| |||||||||    
T  28525667 ctgaagagaacgtgaggcataaaggtaccggttgaggaagaatcaaatcagc 28525616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 41297059 - 41297222
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||| |||||||||||||||||||||  |||| |||||||||||||||||| ||||||||| |||||||||  ||| |||||| ||||| ||||||    
T  41297059 ccattaacagaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccccaatacaccgtacacgacaatactctctcttct-ccccat 41297157  T
Q  215 ctaaagag---tacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || |||||   |||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  41297158 ctgaagagaactacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 41297222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 115 - 266
Target Start/End: Complemental strand, 28531861 - 28531712
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || |||||||||||||||  || |||||||| ||||| ||||||    
T  28531861 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtctccaatataccgtacatggc-aaactctctcttct-ccccat 28531764  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagc 266  Q
    || ||||| || |||| ||||||||||| |||  |||||||| |||||||||    
T  28531763 ctgaagagaacgtgaggcataaaggtactggttgaggaagaatcaaatcagc 28531712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 19066491 - 19066331
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||| ||| | || ||||||||| |||| ||||  |||| ||||| ||||||||| ||    
T  19066491 ccattaacgaaataatggaaaaccctaatgaccatccaatataaaataggttgtggtccccaatacaccggacacgacaaa-ctctctcttctcccc-at 19066394  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
    || ||||| ||||||| |||||||||||||||  |||||||| ||||||||| ||||||||||    
T  19066393 ctgaagagaacttgaggcataaaggtaccggttgaggaagaatcaaatcagctgccgctaacc 19066331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 115 - 293
Target Start/End: Original strand, 14609950 - 14610124
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||| |||||||||||  |||| ||| ||||||||| |||| ||||||||| |||| |||| ||||| || ||  |||||||| ||    
T  14609950 ccattaacggaataatgg-aaaccctaatggtcatctaatgtaaaagaggttatggtccccaatacaccgaacacggcaaa-ctttcttttctcccc-at 14610046  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    || ||||| |||| || |||||| ||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||    
T  14610047 ctgaagagaactttaggcataaaagtaccggttgaggaagaaccaaatcagccgccgctaaccctt-ttgtttgtttca 14610124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 19060150 - 19059990
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| | |  ||| ||  |||||||| ||||| ||| ||    
T  19060150 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacatcagaca-cgacaaactctctcttct-cccgat 19060053  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
     | ||||| ||||||| |||||| ||||| ||  |||||||||||||||||| ||||||||||    
T  19060052 atgaagagaacttgaggcataaaagtaccagttgaggaagaaccaaatcagccgccgctaacc 19059990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 115 - 293
Target Start/End: Original strand, 20499918 - 20500094
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||| |||||||| |||||||||||  |||| |||| | ||||||||||| ||||||||| ||||||||| |||||||||||  |||| | ||||    
T  20499918 ccattaacgaaataatggaaaaccctaatggtcatccaataaataagaggctatggtccccaatacaccgtacacggcaaaactctctgttct-ctccat 20500016  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
     | ||||| ||||||| |||||| ||||||||  |||||||||||||||| | || ||||| |||| ||||||||||||    
T  20500017 ttgaagagaacttgaggcataaatgtaccggttaaggaagaaccaaatcaaccgctgctaa-ccttcttgtttgtttca 20500094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 30771415 - 30771517
Alignment:
Q  17 ttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataacc 116  Q
    ||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||| |  || ||||||||    
T  30771415 ttttattttatgttatatacttttgttttggtattgatacaaactttatgttatgattttctgcaaaaataaagttcatgaggttgttattgttataacc 30771514  T
Q  117 att 119  Q
    |||    
T  30771515 att 30771517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 293
Target Start/End: Original strand, 30772062 - 30772239
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||| ||||||||  ||||||| |||| |||| |||||| ||||| ||||| ||| ||||||| |  ||||  |||| ||||| ||||||||| ||    
T  30772062 ccattaacagaataatgaaaaaccctgatgatcatccaatatagaagagactatggtccacaatatatcagacacgacaaa-ctctctcttctcccc-at 30772159  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaaccc-ttgttgtttgtttca 293  Q
    || ||||| ||||||| |||||||||||||||  |||||||| ||||||||| ||||||||||| ||||||| |||||||    
T  30772160 ctgaagagaacttgaggcataaaggtaccggttgaggaagaatcaaatcagccgccgctaaccctttgttgtgtgtttca 30772239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 28526406 - 28526326
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    |||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||| ||||||| |||||||||||||    
T  28526406 tttatgttctatacttttgttttgatattgatacagactttatgttatgattttctgcagaaataaaattcatgaggttat 28526326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 19060743 - 19060639
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    ||||||| || | ||||||||||||||||||| ||| |||||| ||||||| |||||||||| |||| ||||| |||| |||||||||| ||| ||||||    
T  19060743 tcttttatttaaggttctatacttttgttttgatatcgatacagactttatgttatgattttctgcagaaatatagtttatgaggttatttttgttataa 19060644  T
Q  115 ccatt 119  Q
    |||||    
T  19060643 ccatt 19060639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 41296418 - 41296517
Alignment:
Q  23 tttatgttctatacttttg--ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggtta-tgtttattataaccatt 119  Q
    ||||||||||||||||||   |||||| ||||||||| ||||||| |||||||||| |||| |||||||||||||||||||| | ||| |||||||||||    
T  41296418 tttatgttctatacttttaatttttggaattgatacagactttatgttatgattttctgcagaaataaagttcatgaggttattttttgttataaccatt 41296517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 116 - 293
Target Start/End: Complemental strand, 30384762 - 30384589
Alignment:
Q  116 cattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatc 215  Q
    ||||||||||||||||| ||| | ||||   |||| |||||||||||| ||||| |||| |||| ||||||||| |||||  | || ||||||||| |||    
T  30384762 cattaacggaataatggaaaatc-taatagtcatccaatataaaagagactatggtccc-aatacaccgtacacggcaaacat-tctcttctcccc-atc 30384667  T
Q  216 taaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    | ||||| ||| |||  ||||||||||||||  |||||||||||||||||  |||||||| |  |||||| |||||||    
T  30384666 tgaagagaactcgaggtataaaggtaccggttgaggaagaaccaaatcagtcgccgctaagctatgttgtgtgtttca 30384589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 33753612 - 33753540
Alignment:
Q  116 cattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacac 189  Q
    |||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||| || || |||||||||    
T  33753612 cattaacggaataatgggaaaccctaatgaccatcatat-taaaagagcctatgttcctcagtacaccgtacac 33753540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 32095248 - 32095146
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    ||||||| ||||||||||||| ||| ||||| |||| |||||| |||||||  ||| ||||| |||| ||||||||||||| ||||||| ||| ||||||    
T  32095248 tcttttattttatgttctataattt-gttttagtatcgatacagactttatggtataattttctgcagaaataaagttcataaggttat-tttgttataa 32095151  T
Q  115 ccatt 119  Q
    |||||    
T  32095150 ccatt 32095146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 12687214 - 12687129
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggtt 101  Q
    ||||||| ||||||||||||| ||||||||| | || |||||| |||||||  ||||||||| |||| ||||||||||||| |||||    
T  12687214 tcttttattttatgttctata-ttttgttttagaatcgatacagactttatggtatgattttctgcagaaataaagttcataaggtt 12687129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 33849242 - 33849194
Alignment:
Q  120 aacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatg 169  Q
    ||||||||||||||||||||||||||| |||| || |||||||| |||||    
T  33849242 aacggaataatgggaaaccctaatgactatcatat-taaaagagcctatg 33849194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 25387884 - 25387724
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||||||    
T  25387884 ccattaatggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccat 25387786  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  25387785 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 25387724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 31051324 - 31051484
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||  ||| |||||| ||||| ||||||    
T  31051324 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtacacgacaatactctctcttct-ccccat 31051422  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  31051423 ctgaagagaacttgaggcataaaggtaccggttaaggaagaaccaaatcagccgccgctaac 31051484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 115 - 293
Target Start/End: Complemental strand, 8093225 - 8093050
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||| || ||||||||  |||| ||||||    
T  8093225 ccattaacggaataatgggaaaccctaacgatcatcaaatataaaagaggctatggtccccaatataccgaacacggc-aaactctcttttct-ccccat 8093128  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttca 293  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||| ||| |||||||||||||    
T  8093127 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaa-cctagttgtttgtttca 8093050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 1078024 - 1078184
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| | ||||    
T  1078024 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-caccat 1078122  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  1078123 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagcggccgctaac 1078184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 25381915 - 25381755
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  25381915 ccattaatggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggcaatactctctcttct-ccccat 25381817  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  25381816 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 25381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 31057824 - 31057984
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||  ||| |||||| ||||| ||||||    
T  31057824 ccattaacggaataatgggaaaccctaatggccatacaatataaaagaggctatgatccccaatataccgtacacgacaatactctctcttct-ccccat 31057922  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||  |||||||||    
T  31057923 ctgaagagaacttgaggcataaaggtaccggttaaggaagaaccaaatcagtcgccgctaac 31057984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 34739766 - 34739925
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||| || |||||||||||||||||| ||  |||||||| ||||| ||| ||    
T  34739766 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctgtggtccccaatataccgtaca-cgacaaactctctcttct-cccaat 34739863  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  34739864 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 34739925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 115 - 277
Target Start/End: Original strand, 44409780 - 44409941
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||||||| |||| ||||||||| ||  |||||  |||||||||| ||||| ||||||    
T  44409780 ccattaacggaataatgagaaaccctaatggccatccaatataaaagaggttatggtccccaatacactatacacgacaaaactctctcttct-ccccat 44409878  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
    || ||||| ||||||| ||||||||||| |||  |||||||||||||||||| ||||||||||    
T  44409879 ctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaatcagccgccgctaacc 44409941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 12184632 - 12184544
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| |||||||||||||    
T  12184632 tcttttactttatgttctatacttttgttttggtattgatacagactttatgttatgattttctgcataaataaaattcatgaggttat 12184544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 24927140 - 24926980
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| | |||||||  || |||   | ||||||||| ||||| ||||||    
T  24927140 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatggttcccaatactccatac-gtggaaaactctctcttct-ccccat 24927043  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
    || ||||| ||||||| |||| ||||||||||  |||||||||||||||||| ||| ||||||    
T  24927042 ctgaagagaacttgaggcatataggtaccggttgaggaagaaccaaatcagctgccactaacc 24926980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 38152342 - 38152184
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||| |||||||| ||  ||||||   ||||| ||||||    
T  38152342 ccattaacggaataatgggaaacc-taatgaccatccaatataaaagaggctatggttcccaatacaccgtaca-cgacaaactcgttcttct-ccccat 38152246  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    |||||||  ||||||  |||||||||||||||  | |||||||||||| ||| |||||||||    
T  38152245 ctaaagaaaacttgaagcataaaggtaccggttgaagaagaaccaaattagctgccgctaac 38152184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 50305977 - 50306129
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||||||| || ||| |||| ||||| ||||||    
T  50305977 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccccaatacaccgtacacggc-aaattctctcttct-ccccat 50306074  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| |||||||       | |||||||  |||||||||||||||||| |||||||||    
T  50306075 ctgaagagaacttgag-------gctaccggttgaggaagaaccaaatcagccgccgctaac 50306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 24927789 - 24927701
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    ||||||| || |||||||||||||||| |||||||| |||||| || |||| |||||||||| |||| |||||||||||||||||||||    
T  24927789 tcttttatttaatgttctatacttttgatttggtatcgatacagacattatgttatgattttctgcagaaataaagttcatgaggttat 24927701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 31057184 - 31057264
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    |||||||||||||||||||||||| |||||||||| ||||||| |||||||||| | || ||||||| |||||||||||||    
T  31057184 tttatgttctatacttttgttttgatattgatacagactttatgttatgattttctacagaaataaaattcatgaggttat 31057264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 25382560 - 25382461
Alignment:
Q  23 tttatgttctatacttttg--ttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggtta-tgtttattataaccatt 119  Q
    ||||||||||||||||||   |||||| ||||||||| ||||||| |||||||||| |||| |||||||||||||||||||| | ||| |||||||||||    
T  25382560 tttatgttctatacttttaatttttggaattgatacagactttatgttatgattttctgcagaaataaagttcatgaggttattttttgttataaccatt 25382461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 25161764 - 25161683
Alignment:
Q  23 tttatgttctatacttttgtttt-ggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||| |||||| ||||| ||||| ||||    
T  25161764 tttatattctatacttttgtttttggtattgatacatactttatgttataattttatgaataaatgaagtttatgagattat 25161683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 265
Target Start/End: Complemental strand, 24964087 - 24963940
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||| ||||| ||||||||||   |||| ||||||||||| ||||||||| |||| | ||||||    || |||||||| ||||| ||||||    
T  24964087 ccattaacggaaaaatgg-aaaccctaattgtcatctaatataaaagatgctatgatcaccaagacaccgtatgtggc-aaactctctcttct-ccccat 24963991  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcag 265  Q
    || ||||| ||||||| |||||| |||| |||  |||||||||||||||||    
T  24963990 ctgaagaggacttgaggcataaatgtactggttgaggaagaaccaaatcag 24963940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 27954951 - 27955007
Alignment:
Q  123 ggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaata 179  Q
    |||||||||||||| | |||||  |||| ||||||||||| | ||||||||||||||    
T  27954951 ggaataatgggaaatcataatggtcatccaatataaaagatgttatgatccccaata 27955007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 28421338 - 28421179
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| || |||||||| ||||| ||||||    
T  28421338 ccattaacggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatacaccgtacacggc-aaactctctcttct-ccccat 28421241  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| |||||||||||||||  |||||||||||||||||| |||||||||    
T  28421240 ctgaagagaacttgaggcataaaggtaccggttgaggaagaaccaaatcagccgccgctaac 28421179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 3811548 - 3811389
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||||||||||| || |||||||| ||||| ||||||    
T  3811548 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccccaatataccgtacacggc-aaactctctcttct-ccccat 3811451  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| ||||||||||| |||  |||||||||||||||||| |||||||||    
T  3811450 ctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaatcagccgccgctaac 3811389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 3817690 - 3817531
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||||||||||| || |||||||| ||||| ||||||    
T  3817690 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccccaatataccgtacacggc-aaactctctcttct-ccccat 3817593  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||| ||||||| ||||||||||| |||  |||||||||||||||||| |||||||||    
T  3817592 ctgaagagaacttgaggcataaaggtactggttgaggaagaaccaaatcagccgccgctaac 3817531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 351575 - 351726
Alignment:
Q  123 ggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagag 222  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||| ||  |||||||| ||||| |||||||| |||||    
T  351575 ggaataatgggaaaccctaatggccatccaatataaaagaggctatggtccccaatataccgtaca-cgacaaactctctcttct-ccccatctgaagag 351672  T
Q  223 tacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
     ||||||| |||||||||||||||  |||||||| ||||||||| |||||||||    
T  351673 aacttgaggcataaaggtaccggttgaggaagaatcaaatcagccgccgctaac 351726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 22742309 - 22742148
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| || |||||||||||||||  ||||||||||| ||||| ||| ||    
T  22742309 ccattaacggaataatgggaaaccctaatggccatccaatataaaagagactatggtctccaatataccgtacatggcaaaactctctcttct-cccaat 22742211  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
    || ||||| ||||||| |||||||||||| ||  | ||| |||||||||||| ||||||||||    
T  22742210 ctgaagagaacttgaggcataaaggtaccagttgatgaaaaaccaaatcagccgccgctaacc 22742148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 116 - 266
Target Start/End: Complemental strand, 35148387 - 35148239
Alignment:
Q  116 cattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatc 215  Q
    ||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||||||  || |||||||| ||||| |||||||    
T  35148387 cattaacagaataatgggaaactctaatggccatccaatataaaagaggctatgatccccaatacaccgtacatggc-aaactctctcttct-ccccatc 35148290  T
Q  216 taaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagc 266  Q
    | ||||| | ||||| |||||||||||||||  ||||||||||||||||||    
T  35148289 tgaagagaatttgaggcataaaggtaccggttgaggaagaaccaaatcagc 35148239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 276
Target Start/End: Original strand, 20238762 - 20238890
Alignment:
Q  147 catcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagagtacttgagacataaaggtaccggt 246  Q
    |||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| |||||||| ||||| ||||||| |||||||||||||||    
T  20238762 catccaatataaaagaggctatggtccccaatataccgtacacggcaatactctctcttct-ccccatctgaagagaacttgaggcataaaggtaccggt 20238860  T
Q  247 ataggaagaaccaaatcagcagccgctaac 276  Q
      |||||||||||||||||| |||||||||    
T  20238861 tgaggaagaaccaaatcagccgccgctaac 20238890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 5849310 - 5849469
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccat 214  Q
    ||||||||||||||||| |||||| |||||  |||| |||||||||||||||||| ||| ||||||||||||||| || ||||||||  |||| ||||||    
T  5849310 ccattaacggaataatgagaaaccttaatggtcatccaatataaaagaggctatggtcctcaatataccgtacacggc-aaactctcttttct-ccccat 5849407  T
Q  215 ctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    || ||||  ||||||| |||||||||||||||  |||||||||||||||||  |||||||||    
T  5849408 ctgaagataacttgaggcataaaggtaccggttgaggaagaaccaaatcagacgccgctaac 5849469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 339169 - 339319
Alignment:
Q  123 ggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagag 222  Q
    |||||||||||||||| ||||| ||||| |||||||||||||  ||| |||||||||||||||||||  |||| ||||| ||||||||| |||| |||||    
T  339169 ggaataatgggaaacc-taatggccatccaatataaaagaggtcatggtccccaatataccgtacacgacaaa-ctctctcttctcccc-atctgaagag 339265  T
Q  223 tacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
     ||||||| |||||||||||||||  |||||||| ||||||||| |||||||||    
T  339266 aacttgaggcataaaggtaccggttgaggaagaatcaaatcagccgccgctaac 339319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 277
Target Start/End: Original strand, 43539757 - 43539920
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcc--ccc 212  Q
    ||||||||||||||| || |||||||||||  || | ||||||||||||| |||| ||||||||||||||| ||| || |||||||| |||||||  |||    
T  43539757 ccattaacggaataacggaaaaccctaatggtcacccaatataaaagaggttatggtccccaatataccgtgcacggc-aaactctctcttctccttccc 43539855  T
Q  213 atctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacc 277  Q
    |||| ||||| |||| || ||||||||||| |||  |||||||||||||||||  ||||||||||    
T  43539856 atctgaagagaactttaggcataaaggtactggttgaggaagaaccaaatcagtcgccgctaacc 43539920  T

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Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 350936 - 351016
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttat 103  Q
    |||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||| |||||||||||||||||||||    
T  350936 tttatgttctatacttttgttttgatattgatacagactttatgttatgattttctgcagaaataaagttcatgaggttat 351016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 276
Target Start/End: Original strand, 15843730 - 15843886
Alignment:
Q  119 taacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccg-tacaccgcaaaactctcccttctcccccatcta 217  Q
    ||||||||||||||||||| ||||||  |||| ||||||||||||| |||| || |||||| |||| ||||| ||||| |||||  |||||||| ||||     
T  15843730 taacggaataatgggaaactctaatggtcatccaatataaaagaggttatggtctccaatacaccggtacacggcaaa-ctctctattctcccc-atctg 15843827  T
Q  218 aagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    ||||| ||||||| |||||| ||||| ||  |||||||||||||||||| |||||||||    
T  15843828 aagagaacttgaggcataaatgtaccagttgaggaagaaccaaatcagccgccgctaac 15843886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 276
Target Start/End: Original strand, 15860839 - 15860995
Alignment:
Q  119 taacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccg-tacaccgcaaaactctcccttctcccccatcta 217  Q
    ||||||||||||||||||| ||||||  |||| ||||||||||||| |||| || |||||| |||| ||||| ||||| |||||  |||||||| ||||     
T  15860839 taacggaataatgggaaactctaatggtcatccaatataaaagaggttatggtctccaatacaccggtacacggcaaa-ctctctattctcccc-atctg 15860936  T
Q  218 aagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    ||||| ||||||| |||||| ||||| ||  |||||||||||||||||| |||||||||    
T  15860937 aagagaacttgaggcataaatgtaccagttgaggaagaaccaaatcagccgccgctaac 15860995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 35149008 - 35148910
Alignment:
Q  23 tttatgttctatacttttgtttt-ggtattgatacatactttatattatgattttatgcataaataaagttcatgaggtta-tgtttattataaccatt 119  Q
    ||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||||| ||||||||| | ||| |||||||||||    
T  35149008 tttatgttctatacttttgtttttggtattgatacagactttatgttatgattttctgcataaataaagtttatgaggttattttttcttataaccatt 35148910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 117 - 276
Target Start/End: Complemental strand, 5979553 - 5979394
Alignment:
Q  117 attaacggaataatgggaaaccctaatgaccatcaaata-taaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatc 215  Q
    |||||| |||||||||||||  ||||||  |||| |||| ||||||||| |||| ||||||||| |||||||||  ||| |||||| ||||||||| |||    
T  5979553 attaacagaataatgggaaagtctaatggtcatccaataataaaagaggttatggtccccaatacaccgtacacgacaatactctctcttctcccc-atc 5979455  T
Q  216 taaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    | ||||| ||||||| |||||| ||||||||  |||||||||||||| ||  |||||||||    
T  5979454 tgaagagaacttgaggcataaaagtaccggttgaggaagaaccaaattagtcgccgctaac 5979394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 3812190 - 3812094
Alignment:
Q  23 tttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataaccatt 119  Q
    |||||||||||||||||||||||| |||||||||| | ||||| |||| ||||| |||| ||||||| |||||||||||||  || |||||||||||    
T  3812190 tttatgttctatacttttgttttgatattgatacagaatttatgttattattttctgcagaaataaaattcatgaggttattattgttataaccatt 3812094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 26383449 - 26383543
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctccc 210  Q
    ||||||| ||||||||||||||||||||||  |||| |||||||||||||||||| |||| |||| |||| |||| || |||||||| ||||||||    
T  26383449 ccattaatggaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccctaatacaccggacacggc-aaactctctcttctccc 26383543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 42767581 - 42767500
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactc 199  Q
    |||||||||||||||| ||||||||||||| ||||   ||||||||||||||||| |||| |||||||||||||| |||| ||||    
T  42767581 ccattaacggaataataggaaaccctaatggccat---atataaaagaggctatggtcccgaatataccgtacacggcaatactc 42767500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 35152908 - 35152849
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccc 174  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||    
T  35152908 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccc 35152849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 35150864 - 35150760
Alignment:
Q  171 tccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagcc 270  Q
    ||||||||| ||||||||  ||||| ||||| ||||||||| |||| ||||| ||||||| |||||||||||||||  | ||| |||||||||||| |||    
T  35150864 tccccaatacaccgtacatggcaaa-ctctctcttctcccc-atctgaagagaacttgaggcataaaggtaccggttgaagaataaccaaatcagccgcc 35150767  T
Q  271 gctaacc 277  Q
    |||||||    
T  35150766 gctaacc 35150760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 7608309 - 7608381
Alignment:
Q  203 cttctcccccatctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaa 275  Q
    |||||||||||||  ||||| ||||||| ||||||||||||| | ||||||| ||||||||||  ||||||||    
T  7608309 cttctcccccatcggaagagaacttgagtcataaaggtaccgatttaggaagtaccaaatcagtcgccgctaa 7608381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 7608207 - 7608276
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccg 184  Q
    ||||||| | |||||||  ||||||||||||||||| ||||||||||| | |||| ||||||||| ||||    
T  7608207 ccattaatgaaataatgaaaaaccctaatgaccatccaatataaaagatgttatggtccccaatacaccg 7608276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 24690854 - 24690886
Alignment:
Q  249 aggaagaaccaaatcagcagccgctaacccttg 281  Q
    |||||||||||||||||| ||||||||||||||    
T  24690854 aggaagaaccaaatcagccgccgctaacccttg 24690886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 117 - 276
Target Start/End: Complemental strand, 173267 - 173110
Alignment:
Q  117 attaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatct 216  Q
    ||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||| |||||| || || |||||||| ||||| ||||||||    
T  173267 attaacggaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccccaatacaccgtatacggc-aaactctctcttct-ccccatct 173170  T
Q  217 aaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
     ||||| ||||||| ||||||||||| |||  |||||||||||||||||| |||||||||    
T  173169 gaagagaacttgaggcataaaggtactggttgaggaagaaccaaatcagccgccgctaac 173110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 122 - 276
Target Start/End: Complemental strand, 1566 - 1414
Alignment:
Q  122 cggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaaga 221  Q
    ||||||||||| ||| ||||||| ||||| |||||||||||||||||| ||||||||||| | |||||||| |||||||| ||||| |||||||| ||||    
T  1566 cggaataatggaaaatcctaatggccatccaatataaaagaggctatggtccccaatatatcatacaccgc-aaactctctcttct-ccccatctgaaga 1469  T
Q  222 gtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaac 276  Q
    | ||||||| |||||| ||||||||  ||||| |||||||||||  |||||||||    
T  1468 gaacttgaggcataaatgtaccggttgaggaaaaaccaaatcagtcgccgctaac 1414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 157 - 275
Target Start/End: Complemental strand, 956 - 840
Alignment:
Q  157 aaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccccatctaaagagtacttgagacataaaggtaccggtataggaagaa 256  Q
    ||||||||||||| ||||||||| ||||||||| ||||| ||||| ||||||||| |||| ||||| ||||||| |||||| ||||||||  ||||||||    
T  956 aaaagaggctatggtccccaatacaccgtacacggcaaa-ctctctcttctcccc-atctgaagagaacttgaggcataaacgtaccggttgaggaagaa 859  T
Q  257 ccaaatcagcagccgctaa 275  Q
    |||||||||| ||||||||    
T  858 ccaaatcagccgccgctaa 840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 3631 - 3527
Alignment:
Q  15 tcttttactttatgttctatacttttgttttggtattgatacatactttatattatgattttatgcataaataaagttcatgaggttatgtttattataa 114  Q
    ||||||| || ||||||||||||||||||||| ||| |||||| ||| ||| |||||||||| |||| |||||||||| |||||||||| ||| ||||||    
T  3631 tcttttatttaatgttctatacttttgttttgatatcgatacagactatatgttatgattttctgcagaaataaagtttatgaggttatttttgttataa 3532  T
Q  115 ccatt 119  Q
    |||||    
T  3531 ccatt 3527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 843 - 938
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtacaccgcaaaactctcccttctcccc 211  Q
    |||||||| |||||||||||||||||||||  |||| |||||||||||||||||| ||||||||| || ||||| ||  |||||||| |||||||||    
T  843 ccattaacagaataatgggaaaccctaatggtcatccaatataaaagaggctatggtccccaatacactgtaca-cgacaaactctctcttctcccc 938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 956 - 1039
Alignment:
Q  209 ccccatctaaagagtacttgagacataaaggtaccggtataggaagaaccaaatcagcagccgctaacccttgttgtttgtttc 292  Q
    |||||||| ||||| ||||||| ||||||| || ||||  |||||||||||||||||| ||| |||||||||| ||| ||||||    
T  956 ccccatctgaagagaacttgaggcataaagataacggttgaggaagaaccaaatcagccgccactaacccttggtgtgtgtttc 1039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 14053 - 14117
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaata 179  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||||||| |||| |||||||||    
T  14053 ccattaacggaataatgggaaaccctaatggtcatccaatataaaagaggttatggtccccaata 14117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 5749 - 5821
Alignment:
Q  115 ccattaacggaataatgggaaaccctaatgaccatcaaatataaaagaggctatgatccccaatataccgtaca 188  Q
    |||||||| ||||||||||||||| ||| | ||||  |||||||||||||||||| | ||||||| | ||||||    
T  5749 ccattaacagaataatgggaaacc-taacggccattcaatataaaagaggctatggttcccaatacatcgtaca 5821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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