View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_23 (Length: 304)
Name: NF10538_low_23
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 54 - 289
Target Start/End: Complemental strand, 6610142 - 6609910
Alignment:
| Q |
54 |
acaaaggacaattatagtggctctgccactc--aataaaaactattgtaacaactaacaagtgnnnnnnnnnnnnnnnnnnnctataaattatttcagct |
151 |
Q |
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| T |
6610142 |
acaaaggacaattatagtggctctgccactctcaataaaaactattgtaacaactaacaagtgttttttttttcttt-----ctataaattatttcagct |
6610048 |
T |
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| Q |
152 |
tacagcttattgtcacacacaattctaattatgtttgttaaactcaacaaattttaacttccctttgttgtcatcatagtttcaactcatggagtgtgtc |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6610047 |
tacagcttattgtcacacacaattctaattatgtttgttaaactcaacaaattttaacttccctttgttgtcatcatagtttcaactcatggagtgtgtc |
6609948 |
T |
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| Q |
252 |
tctaacaaacatgtttttgttttcatgttttgtcttgt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6609947 |
tctaacaaacatgtttttgttttcatgttttgtcttgt |
6609910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 6602465 - 6602395
Alignment:
| Q |
219 |
ttgtcatcatagtttcaactcatggagtgtgtctctaacaaacatgtttttgttttcatgttttgtcttgt |
289 |
Q |
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| T |
6602465 |
ttgtcaacatagtttcagctcatggagtgtgtctctaacaaacatgtttttattttcatgttttgtcttgt |
6602395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 6610221 - 6610181
Alignment:
| Q |
15 |
catatactgcatcatcttgccacttagagcaattgtttaac |
55 |
Q |
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| T |
6610221 |
catatactgcatcatcttgccacttagagcaattgtttaac |
6610181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 6602588 - 6602531
Alignment:
| Q |
57 |
aaggacaattatagtggctctgccactcaataaaaactattgtaacaactaacaagtg |
114 |
Q |
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| T |
6602588 |
aaggacaatcatagtggctctgccactctataaaaactatgttaacaattaacaagtg |
6602531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 6602517 - 6602462
Alignment:
| Q |
134 |
ctataaattatttcagcttacagcttattgtcacacacaattctaattatgtttgt |
189 |
Q |
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||||||||| |||||||||||| |||||||||||||| | ||||||||| |||||| |
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| T |
6602517 |
ctataaattgtttcagcttacaacttattgtcacacaaagttctaattaagtttgt |
6602462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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