View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10538_low_24 (Length: 299)
Name: NF10538_low_24
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 1358083 - 1357804
Alignment:
| Q |
17 |
caacataacaagaacatgtccaaaataaagattttctatcattgaacctgaaccacaatgagtcaaacaaccaccaactgaaccatgacctaagatctta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1358083 |
caacataacaagaacatgtccaaaataaagattttctatcattgaacctgaaccacaatgagtcaaacaaccaccaactgaaccatgacctaagatctta |
1357984 |
T |
|
| Q |
117 |
ggttgtggggcccaacttttccacactataccatgatcttttgtcctatcctcaaacccatttggtaactcagcaaaaccatttttcaaatctctcaaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1357983 |
ggttgtggggcccaacttttccacactataccatgatcttttgtcctatcctcaaacccatttggtaactcaacaaaaccatttttcaaatctctcaaaa |
1357884 |
T |
|
| Q |
217 |
cccaaaagaaaggtaatttagaattctcaatcccaagagctaattcattgagattttcttggctcaatttcatctcactc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1357883 |
cccaaaagaaaggtaatttagaattctcaatcccaagagctaattcattgagattttcttggctcaatttcacctcactc |
1357804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 20492960 - 20492824
Alignment:
| Q |
24 |
acaagaacatgtccaaaataaagattttctatcattgaacctgaaccacaatgagtcaaacaaccaccaactgaaccatgacctaagatcttaggttgtg |
123 |
Q |
| |
|
||||| ||||| ||||||| ||| || || || | ||||||||||||||||||| ||| ||| ||||||| ||| |||||| |||||||||| | |||| |
|
|
| T |
20492960 |
acaagtacatgcccaaaatgaagcttctcaatgactgaacctgaaccacaatgactcatacatccaccaattgatccatgagctaagatctttagctgtg |
20492861 |
T |
|
| Q |
124 |
gggcccaacttttccacactataccatgatcttttgt |
160 |
Q |
| |
|
| ||||| ||||||| || || |||| |||||||| |
|
|
| T |
20492860 |
gtgcccatgttttccaaacgattccatattcttttgt |
20492824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 1355289 - 1355197
Alignment:
| Q |
24 |
acaagaacatgtccaaaataaagattttctatcattgaacctgaaccacaatgagtcaaacaaccaccaactgaaccatgacctaagatctta |
116 |
Q |
| |
|
||||||||||| ||||||| || ||||| || | ||||| |||||||||||| ||| ||| ||||||| || |||||| ||||||||||| |
|
|
| T |
1355289 |
acaagaacatggccaaaatgaaccttttcaataacagaaccagaaccacaatgactcatacatccaccaattgctccatgagctaagatctta |
1355197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 29954825 - 29954677
Alignment:
| Q |
24 |
acaagaacatgtccaaaataaagattttctatcattgaacctgaaccacaatgagtcaaacaaccaccaactgaaccatgacctaagatcttaggttgtg |
123 |
Q |
| |
|
||||| ||||| ||||||| ||| || || || | ||||||||||||||||||| ||| ||| ||||||| ||| |||||| ||||||||||| |||| | |
|
|
| T |
29954825 |
acaaggacatgcccaaaatgaagcttctcaatgactgaacctgaaccacaatgactcatacatccaccaattgatccatgagctaagatcttaagttgag |
29954726 |
T |
|
| Q |
124 |
gggcccaacttttccacactataccatgatcttttgtcctatcctcaaa |
172 |
Q |
| |
|
| ||||| ||||||| || || ||| |||||||| || |||||||| |
|
|
| T |
29954725 |
gtgcccatgttttccaaacgattccacattcttttgttctttcctcaaa |
29954677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 11532138 - 11531990
Alignment:
| Q |
24 |
acaagaacatgtccaaaataaagattttctatcattgaacctgaaccacaatgagtcaaacaaccaccaactgaaccatgacctaagatcttaggttgtg |
123 |
Q |
| |
|
|||||| |||| ||||||| ||| || || || | ||||||||||||||| ||| ||| ||| ||||| | ||| ||||| ||||||||||| |||||| |
|
|
| T |
11532138 |
acaagagcatgcccaaaatgaagcttctcaatgactgaacctgaaccacagtgactcatacatccaccgattgatccatgtgctaagatcttaagttgtg |
11532039 |
T |
|
| Q |
124 |
gggcccaacttttccacactataccatgatcttttgtcctatcctcaaa |
172 |
Q |
| |
|
| ||||| ||||||| || || ||| | |||||||| || |||||||| |
|
|
| T |
11532038 |
gtgcccatgttttccaaacaattccacgttcttttgttctttcctcaaa |
11531990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 14589248 - 14589156
Alignment:
| Q |
24 |
acaagaacatgtccaaaataaagattttctatcattgaacctgaaccacaatgagtcaaacaaccaccaactgaaccatgacctaagatctta |
116 |
Q |
| |
|
||||||||||| |||| |||||| |||| | | ||||| || |||||||||||||| ||||||||||| ||| |||||| |||||||||| |
|
|
| T |
14589248 |
acaagaacatgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatctta |
14589156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University