View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_25 (Length: 288)
Name: NF10538_low_25
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 1768582 - 1768854
Alignment:
| Q |
1 |
atttccaacaaaaacactagcaggaaaattattcttaggaatttcaccacaaagacgattataactaacattcaacttttgaatcccaacaacactcttt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1768582 |
atttccaacaaaaacacttgcaggaaaattattcttaggaatttcaccacaaagacgattataactaacattcaacttttgaatcccaacaacactcttt |
1768681 |
T |
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| Q |
101 |
gtcacttttccaaacaccaaattatgtgacaaatccaaatacttcaacctatttccaaactttaaactctccaaatcaaacttcaacaaattctctgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1768682 |
gtcacttttccaaacaccaaattatgtgacaaatccaaatacttcaacctatttccaaactttaaactctccaaatcaaacttcaacaaattctctgaac |
1768781 |
T |
|
| Q |
201 |
cacgaaactcaatcaaatactcagtcttattcaacaaaccaacagcactacctgaaatctcattcccagaaag |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1768782 |
cacgaaactcaatcaaatactcagtcttattcaacaaaccaacagcactacctgaaatctcattcccagaaag |
1768854 |
T |
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