View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10538_low_27 (Length: 260)

Name: NF10538_low_27
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10538_low_27
NF10538_low_27
[»] chr7 (1 HSPs)
chr7 (84-183)||(39939253-39939352)
[»] chr3 (3 HSPs)
chr3 (112-183)||(52623476-52623547)
chr3 (124-182)||(42101136-42101194)
chr3 (88-120)||(52623441-52623473)
[»] chr2 (5 HSPs)
chr2 (112-183)||(9810250-9810321)
chr2 (112-182)||(16249277-16249347)
chr2 (115-182)||(45623994-45624061)
chr2 (38-76)||(217607-217645)
chr2 (88-120)||(9810324-9810356)
[»] chr4 (1 HSPs)
chr4 (99-182)||(31887950-31888033)
[»] chr8 (1 HSPs)
chr8 (113-182)||(34579413-34579482)
[»] chr6 (1 HSPs)
chr6 (118-166)||(15484710-15484758)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 39939253 - 39939352
Alignment:
Q  84 gagaaaatataagctgacacccttttgtttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactg 183  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39939253 gagaaaatataagttgacacccttttgtttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaattacaaccactctttaatccactg 39939352  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 52623476 - 52623547
Alignment:
Q  112 ttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactg 183  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52623476 ttgtaccatcctatgtggtatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactg 52623547  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 42101194 - 42101136
Alignment:
Q  124 atgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccact 182  Q
    |||||| |||| |||||||||||||| |||||||||| ||||||  ||||| |||||||    
T  42101194 atgtggtatggatatcttggtaatttcacctcaaaaccacaacctttctttcatccact 42101136  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 52623441 - 52623473
Alignment:
Q  88 aaatataagctgacacccttttgtttgtaccac 120  Q
    ||||||||| |||||||||||||||||||||||    
T  52623441 aaatataagttgacacccttttgtttgtaccac 52623473  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 9810321 - 9810250
Alignment:
Q  112 ttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactg 183  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9810321 ttgtaccatcctatgtggtatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactg 9810250  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 16249347 - 16249277
Alignment:
Q  112 ttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccact 182  Q
    |||||||||||||||||||||||| ||||  ||||||| |||||||||| ||| |||||||||||||||||    
T  16249347 ttgtaccaccctatgtggcatgggcatctaagtaatttcacctcaaaaccacacccactctttaatccact 16249277  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 45624061 - 45623994
Alignment:
Q  115 taccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccact 182  Q
    ||||||||||||||||||||| ||||  ||||||| |||||||||| ||| | |||||||||||||||    
T  45624061 taccaccctatgtggcatgggcatctaagtaatttcacctcaaaaccacacctactctttaatccact 45623994  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 217645 - 217607
Alignment:
Q  38 gtacggaccttgcaagttctaatatcatttcaacgtaat 76  Q
    |||||||||||||||||||||||||||||||||||||||    
T  217645 gtacggaccttgcaagttctaatatcatttcaacgtaat 217607  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 9810356 - 9810324
Alignment:
Q  88 aaatataagctgacacccttttgtttgtaccac 120  Q
    ||||||||| |||||||||||||||||||||||    
T  9810356 aaatataagttgacacccttttgtttgtaccac 9810324  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 31887950 - 31888033
Alignment:
Q  99 gacacccttttgtttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccact 182  Q
    ||||||||||| ||||||||||||||||||||||||| ||||  ||||||| |||||||||| ||| |||||||||||||||||    
T  31887950 gacacccttttatttgtaccaccctatgtggcatgggcatctaagtaatttcacctcaaaaccacacccactctttaatccact 31888033  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 34579482 - 34579413
Alignment:
Q  113 tgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccact 182  Q
    ||||||| ||||||||||||||| ||||  ||| ||| |||||||||| |||   |||||||||||||||    
T  34579482 tgtaccatcctatgtggcatgggcatctaagtagtttcacctcaaaaccacacatactctttaatccact 34579413  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 15484710 - 15484758
Alignment:
Q  118 caccctatgtggcatgggtatcttggtaattttacctcaaaactacaac 166  Q
    |||||||||| |||||||  |||||||||||| |||||||||| |||||    
T  15484710 caccctatgtagcatgggcttcttggtaatttcacctcaaaaccacaac 15484758  T

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