View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_28 (Length: 251)
Name: NF10538_low_28
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 43029969 - 43029750
Alignment:
| Q |
22 |
ccaagatcaaccacatgaagaaaactctcaccctcaaaggcttccaatattatggaattagccacaaaatgtccaaattgaatatgtggacaattttcat |
121 |
Q |
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| T |
43029969 |
ccaagatcaaccacatgaagaaaactctcaccctcaaaggcttccaatattatggaattagccacaaaatgtccaaattgaatatgtggacaattttcat |
43029870 |
T |
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| Q |
122 |
aaaccaacttgaatgcttcttccatttcttctgatgcagcatccattatgttcatcattgattttgtatctgatccagcagagttattaccaattggttg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43029869 |
aaaccaacttgaatgcttcttccatttcttctgatgcagcatccattatgttcatcattgattttgtatctgatccagcagagttattaccaattggttg |
43029770 |
T |
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| Q |
222 |
aatcagagttagtctctctg |
241 |
Q |
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|||||||||||||||||||| |
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| T |
43029769 |
aatcagagttagtctctctg |
43029750 |
T |
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