View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_29 (Length: 250)
Name: NF10538_low_29
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 45088978 - 45089216
Alignment:
| Q |
1 |
tccacctccgtacaatctcacatagtcaacaaaccacctgacgcacctactaaaagccgaaaataataaccatgtggcatgcttccccaaatggaagaac |
100 |
Q |
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| T |
45088978 |
tccacctccgtacaatctcacatagtcaacaaaccacctgacgcacctactaaaagccaaaaataataaccatgtggcatgcttccccaaatggaagaac |
45089077 |
T |
|
| Q |
101 |
ataaataatcataaaatacaaagaactttgtttcttgaatacataaaatagatatannnnnnnncaactaccaacttatgcacctccttccgcttctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45089078 |
ataaataatcataaaatacaaagaactttgtttcttgaatacataaaatagatatattttttttcaactaccaacttatgcacctccttccgcttctaaa |
45089177 |
T |
|
| Q |
201 |
aaccatctaaccctcaaaacttcgtgaaataatcttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
45089178 |
aaccatctaaccctcaaaacttcgtgaaataatcttcat |
45089216 |
T |
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