View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_3 (Length: 524)
Name: NF10538_low_3
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Complemental strand, 10003613 - 10003118
Alignment:
| Q |
18 |
gtatgtgacatagcctgatcaagacatcaaactcaagatcttgtggctgattaataagcattcaaatgtagatgggatacccaagaaacatagatcttgg |
117 |
Q |
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| T |
10003613 |
gtatgtgacatagcctgatcaagacatcaaactcaagatcttgtggctgattaataagcattcaaatgtagatgggatacccaagaaacgtagatcttag |
10003514 |
T |
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| Q |
118 |
atttgtgggtattgtttgtccctaggataacattttggcacatggaataaaacatgaacaaaatgtgccccctttttcctaccttatatccnnnnnnngt |
217 |
Q |
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| T |
10003513 |
atttgtgggtattgtttgtccctaggataacattttggcacatggaataaaacatgaacaaaatgtgccccctttttcctaccttatatcctttttttgt |
10003414 |
T |
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| Q |
218 |
tccaccatcaatacagatctgaacaaaattcatatgtttttgttatgtctgttacacaaaaggctacttaagatccaggcattccaaatgtattcatcca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10003413 |
tccaccatcaatacagatctgaacaaaattcatatgtttttgttatgtctgttacacaaaaggctacttaagatccaggcattccaaatgtattcatcca |
10003314 |
T |
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| Q |
318 |
agatattgggtgagctgcatgctgttgtgaaaatgtcgggtgcactgaagtgcccctcagctggcttaatactttgttcaccaattttctgtgtattcac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10003313 |
agatattgggtgagctgcatgctgttgtgaaaatgtcgggtgcactgaagtgcccctgagctggcttaatactttgttcaccaattttctgtgtattcac |
10003214 |
T |
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| Q |
418 |
gtggtgccaaagattaacaggatgatgattttactaaatctttgtaaggtcctctgataagggtaatgtataacaaggtttgtgtgtattgcctat |
513 |
Q |
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| T |
10003213 |
gtggtgccaaagattaacaggatgatgattttactaaatctttgtaaggtcctctgataagggtaatgtataacaaggtttgtgtgtattgcctat |
10003118 |
T |
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