View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_34 (Length: 240)
Name: NF10538_low_34
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36262342 - 36262564
Alignment:
| Q |
1 |
tgatcatatagtatatattgaattaattaggttttgtttggtggtgattacagttaatagcagaaatggtgggcacatatttcttgatatttgcaggatg |
100 |
Q |
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| T |
36262342 |
tgatcatatagtatatattgaattaattaggttttgtttgttggtgaatacagttaatagcagaaatggtgggcacatatttcttaatatttgcaggatg |
36262441 |
T |
|
| Q |
101 |
tgcatcaatagtagtgaacaaggacaacgacaacgtggtaacacttcctgggattgcaattgtttggggactaactttgttggtattgatttactctctt |
200 |
Q |
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| T |
36262442 |
tgcatcaatagtagtgaacaaggacaacgacaacgtagtaacacttccagggattgcaattgtttggggactaactttgttggtattgatttactctctt |
36262541 |
T |
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| Q |
201 |
ggtcatatctctggtgctcattt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
36262542 |
ggtcatatctctggtgctcattt |
36262564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 36267574 - 36267725
Alignment:
| Q |
72 |
ggcacatatttcttgatatttgcaggatgtgcatcaatagtagtgaacaaggacaacgacaacgtggtaacacttcctgggattgcaattgtttggggac |
171 |
Q |
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| T |
36267574 |
ggcacatatttcttgatatttgccggttgtgcttcggtgttggtgaacaagaacaatgaaaatgttgtaacacttcctggaatttcaattgtttggggac |
36267673 |
T |
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| Q |
172 |
taactttgttggtattgatttactctcttggtcatatctctggtgctcattt |
223 |
Q |
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| T |
36267674 |
ttgctgtgatggtgctggtttactctcttggtcacatctctggtgctcattt |
36267725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 5388630 - 5388730
Alignment:
| Q |
123 |
gacaacgacaacgtggtaacacttcctgggattgcaattgtttggggactaactttgttggtattgatttactctcttggtcatatctctggtgctcatt |
222 |
Q |
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||||| ||||| || ||||||| ||||||||| ||||||||||||| || ||| | |||| ||| |||||||| ||||||| |||||||||||||||| |
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| T |
5388630 |
gacaatgacaaagtagtaacacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatt |
5388729 |
T |
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| Q |
223 |
t |
223 |
Q |
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| T |
5388730 |
t |
5388730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 5402439 - 5402539
Alignment:
| Q |
123 |
gacaacgacaacgtggtaacacttcctgggattgcaattgtttggggactaactttgttggtattgatttactctcttggtcatatctctggtgctcatt |
222 |
Q |
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||||| ||||| || ||||||| ||||||||| ||||||||||||| || ||| | |||| ||| |||||||| ||||||| |||||||||||||||| |
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| T |
5402439 |
gacaatgacaaagtagtaacacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatt |
5402538 |
T |
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| Q |
223 |
t |
223 |
Q |
| |
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| |
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| T |
5402539 |
t |
5402539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 5415189 - 5415274
Alignment:
| Q |
138 |
gtaacacttcctgggattgcaattgtttggggactaactttgttggtattgatttactctcttggtcatatctctggtgctcattt |
223 |
Q |
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|||||||||||||| |||||| ||| ||||||| | ||| | |||| |||||||||||| ||||||| || |||||||||||||| |
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| T |
5415189 |
gtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcattt |
5415274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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