View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_36 (Length: 236)
Name: NF10538_low_36
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_36 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 1157443 - 1157218
Alignment:
| Q |
13 |
agcttcttaaccttaccattaggtaccattgcaagacttgttcagaaagattcaaatatgggaccagttacgattggttgtctcaactctct--atcaaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
1157443 |
agcttcttaaccttaccattaggtaccattgcaagacttgttcagaaagattcaaatatgggaccggttacaattggttgtctcaactctctctatcaaa |
1157344 |
T |
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| Q |
111 |
gtgtcgaaaatattggactgttgccgattaataattcatcagaagattattgcagcactctcaaaattaatattgatgatactgtccccacaaattactt |
210 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
1157343 |
gtgtcgaaaatattggattgttgccgattaataactcatccgaagattattgcagcactctcaaaattaatattgatgatactgtccctacaatttactt |
1157244 |
T |
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| Q |
211 |
catgtgttccaaagatcatggtcatc |
236 |
Q |
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|| |||||| |||||||||||||||| |
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| T |
1157243 |
caggtgttcgaaagatcatggtcatc |
1157218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 29413077 - 29413176
Alignment:
| Q |
16 |
ttcttaaccttaccattaggtaccattgcaagacttgttcagaaagattcaaatatgggaccagttacgattggttgtctcaa--ctctctatcaaagtg |
113 |
Q |
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| T |
29413077 |
ttcttaacattaccattaggaac-atagcaagacttcttcagaaagagtcaaatataaaacctgctacaattggttgtctaaattctctctatcaaagtg |
29413175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 23259465 - 23259254
Alignment:
| Q |
13 |
agcttcttaaccttaccattaggtaccattgcaagacttgttcagaaagattcaaatatgggaccagttacgattggttgtctcaact--ctctatcaaa |
110 |
Q |
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| T |
23259465 |
agcttcttaacattaccattagcaaccattgcaagacttcttcataaagagtcaaatattggaccggttacaattggttgtcttaactcactctattgaa |
23259366 |
T |
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| Q |
111 |
gtgtcgaaaatattggactgttgccgattaataattcatcagaagattattgcagcactctcaaaattaatattgatgatactgtccccacaaattactt |
210 |
Q |
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|||| |||| | || || ||||||||| || ||| ||||| ||||||||||| ||| |||||||||||| ||||||||||||| ||| | ||||||||| |
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| T |
23259365 |
gtgtggaaattcttcgattgttgccgagtactaactcatctgaagattattgtggcagtctcaaaattaacattgatgatactgaccctaaaaattactt |
23259266 |
T |
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| Q |
211 |
catgtgttccaa |
222 |
Q |
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||| |||||||| |
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| T |
23259265 |
catttgttccaa |
23259254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 23251720 - 23251509
Alignment:
| Q |
13 |
agcttcttaaccttaccattaggtaccattgcaagacttgttcagaaagattcaaatatgggaccagttacgattggttgtctcaact--ctctatcaaa |
110 |
Q |
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||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||| ||| ||||| ||||| ||||||||||| |||| ||||||| || |
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| T |
23251720 |
agcttcttaacattaccattaggaaccattgcaagacttcttcagaaagagtcaagtattggaccggttacaattggttgtcttaactcactctatcgaa |
23251621 |
T |
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| Q |
111 |
gtgtcgaaaatattggactgttgccgattaataattcatcagaagattattgcagcactctcaaaattaatattgatgatactgtccccacaaattactt |
210 |
Q |
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|||| ||||| || || ||||| | | | |||| || || |||||||||||| ||||||||| ||||||| ||||||| || |||||||| ||||| |
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| T |
23251620 |
gtgttgaaaaaatgggtttgttgacaaattataactcgtcggaagattattgccgcactctcagaattaattttgatgactctcagcccacaaagtactt |
23251521 |
T |
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| Q |
211 |
catgtgttccaa |
222 |
Q |
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||| |||||||| |
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| T |
23251520 |
catatgttccaa |
23251509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 23317231 - 23317128
Alignment:
| Q |
13 |
agcttcttaaccttaccattaggtaccattgcaagacttgttcagaaagattcaaatatgggaccagttacgattggttgtctcaact--ctctatcaaa |
110 |
Q |
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||||||||||| ||||||||||| || |||||||||||| |||| ||||||| ||||||||||| | ||||||||||| |||| |||||||||| |
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| T |
23317231 |
agcttcttaacattaccattaggaactattgcaagactttcacagatggattcaagcatgggaccagtcaaaattggttgtcttaactcactctatcaaa |
23317132 |
T |
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| Q |
111 |
gtgt |
114 |
Q |
| |
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|||| |
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| T |
23317131 |
gtgt |
23317128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 23327577 - 23327474
Alignment:
| Q |
13 |
agcttcttaaccttaccattaggtaccattgcaagacttgttcagaaagattcaaatatgggaccagttacgattggttgtctcaa--ctctctatcaaa |
110 |
Q |
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||||||||||| || |||||||| || |||||||||||| | |||||||| || | ||| || || ||||| |||||||||||||| ||||||||||| |
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| T |
23327577 |
agcttcttaacattgccattaggaacaattgcaagacttctgcagaaagagtcgattatcggtcctgttacaattggttgtctcaattctctctatcaag |
23327478 |
T |
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| Q |
111 |
gtgt |
114 |
Q |
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|||| |
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| T |
23327477 |
gtgt |
23327474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 23340484 - 23340393
Alignment:
| Q |
13 |
agcttcttaaccttaccattaggtaccattgcaagacttgttcagaaagattcaaatatgggaccagttacgattggttgtctcaactctct |
104 |
Q |
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||||||||||| || |||||||| ||||| |||||||| |||||||||| | || |||||||| ||||| || || |||||||||||||| |
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| T |
23340484 |
agcttcttaacgtttccattaggaaccatcacaagacttcttcagaaagacactaacatgggaccggttacaataggctgtctcaactctct |
23340393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 24122155 - 24122113
Alignment:
| Q |
11 |
tcagcttcttaaccttaccattaggtaccattgcaagacttgt |
53 |
Q |
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| T |
24122155 |
tcagcttcttaaccttaccattaggtactatttcaagacttgt |
24122113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 23245019 - 23244939
Alignment:
| Q |
13 |
agcttcttaaccttaccattaggtaccattgcaagacttgttcagaaagattcaaatatgggaccagttacgattggttgt |
93 |
Q |
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|||||||| || || || ||||| ||||||||||||||||| ||||| |||||||| || || |||||||| || |||||| |
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| T |
23245019 |
agcttcttgacattgcctttaggaaccattgcaagacttgtgcagaaggattcaaagatcgggccagttactatcggttgt |
23244939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 22622833 - 22622879
Alignment:
| Q |
13 |
agcttcttaaccttaccattaggtaccattgcaagacttgttcagaa |
59 |
Q |
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| T |
22622833 |
agcttcttaacatttccattaggaaccattgctagacttgttcagaa |
22622879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 23322919 - 23322871
Alignment:
| Q |
143 |
aattcatcagaagattattgcagcactctcaaaattaatattgatgata |
191 |
Q |
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|||||||| |||||||||||||||||||| ||| |||| || ||||||| |
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| T |
23322919 |
aattcatcggaagattattgcagcactcttaaatttaacatcgatgata |
23322871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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