View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10538_low_39 (Length: 231)

Name: NF10538_low_39
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10538_low_39
NF10538_low_39
[»] chr3 (8 HSPs)
chr3 (14-214)||(42084159-42084359)
chr3 (19-72)||(21872321-21872374)
chr3 (15-73)||(3467437-3467495)
chr3 (14-72)||(36783384-36783442)
chr3 (11-72)||(33405217-33405278)
chr3 (11-68)||(44061077-44061134)
chr3 (19-72)||(48397613-48397666)
chr3 (36-72)||(41057022-41057058)
[»] chr6 (6 HSPs)
chr6 (14-72)||(4006676-4006734)
chr6 (14-72)||(281898-281956)
chr6 (11-70)||(29274281-29274340)
chr6 (31-72)||(2727906-2727947)
chr6 (14-70)||(14492264-14492320)
chr6 (14-54)||(22742328-22742368)
[»] chr2 (9 HSPs)
chr2 (14-72)||(11513860-11513918)
chr2 (14-73)||(40145424-40145483)
chr2 (19-72)||(5043610-5043663)
chr2 (14-71)||(33942112-33942169)
chr2 (14-71)||(42592301-42592358)
chr2 (10-70)||(2416271-2416331)
chr2 (14-70)||(23143030-23143086)
chr2 (14-70)||(23554820-23554876)
chr2 (22-70)||(35755554-35755602)
[»] chr1 (12 HSPs)
chr1 (21-72)||(25006084-25006135)
chr1 (30-72)||(25005847-25005889)
chr1 (14-72)||(27738230-27738288)
chr1 (21-69)||(7218127-7218175)
chr1 (14-70)||(30371110-30371166)
chr1 (14-72)||(10581127-10581185)
chr1 (22-72)||(17269220-17269270)
chr1 (14-72)||(28467357-28467415)
chr1 (14-72)||(49517032-49517090)
chr1 (19-72)||(5592735-5592788)
chr1 (19-72)||(25479548-25479601)
chr1 (19-72)||(49888734-49888787)
[»] chr8 (3 HSPs)
chr8 (14-72)||(34770854-34770912)
chr8 (19-72)||(6509353-6509406)
chr8 (36-72)||(9834839-9834875)
[»] chr7 (5 HSPs)
chr7 (14-72)||(1417226-1417284)
chr7 (14-72)||(47046158-47046216)
chr7 (19-72)||(12110327-12110380)
chr7 (14-66)||(45813236-45813288)
chr7 (11-72)||(27548222-27548283)
[»] chr5 (4 HSPs)
chr5 (15-72)||(34205202-34205259)
chr5 (14-70)||(36539708-36539764)
chr5 (10-70)||(9202800-9202860)
chr5 (19-71)||(10272482-10272534)
[»] chr4 (5 HSPs)
chr4 (11-72)||(51630070-51630131)
chr4 (14-72)||(18630642-18630700)
chr4 (19-72)||(2996540-2996593)
chr4 (19-72)||(13949894-13949947)
chr4 (20-69)||(49219107-49219156)
[»] scaffold0045 (1 HSPs)
scaffold0045 (11-65)||(84186-84240)
[»] scaffold0024 (1 HSPs)
scaffold0024 (19-69)||(27543-27593)
[»] scaffold0100 (1 HSPs)
scaffold0100 (44-72)||(42608-42636)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 42084359 - 42084159
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagcttaaaacaactcaaggacatgtcaatctgtcgtgttattttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42084359 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagcttaaaacaactcaaggacatgtcaatctgtcgtgttattttt 42084260  T
Q  114 gtaggctctaccaagcagtttcgcaagttcttaagtcagtatataagttctaataagtcaatccaaccaggctaataagtaaacttaatagacatggtac 213  Q
     || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42084259 ctaagctctaccaagcagtttcgcaagttcttaagtcagtatataagttctaataagtcaatccaagcaggctaataagtaaacttaatagacatggtac 42084160  T
Q  214 t 214  Q
    |    
T  42084159 t 42084159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 21872374 - 21872321
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||||| ||||| || |||||||||||||||| |||||||||||||||||    
T  21872374 gataaaataaggtcaaatttttttgatataagctataagttgttttcataagct 21872321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 3467495 - 3467437
Alignment:
Q  15 aaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagctt 73  Q
    |||||||||||||| ||||| ||||||| |||||  |||| |||||||||| |||||||    
T  3467495 aaaggataaaataaagtcaaattgttttcatatagactataagttgttttcgtaagctt 3467437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 36783442 - 36783384
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||| |||||||||| || || ||||||| |||||| ||||||| ||||||||||||||    
T  36783442 caaaagataaaataaagtaaaattgttttcatataaactattagctgttttcataagct 36783384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 33405278 - 33405217
Alignment:
Q  11 tagcaaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    ||||||| | |||||||| || || ||||||| ||||||||||| || ||||||||||||||    
T  33405278 tagcaaaaggtaaaataaagttaatttgttttcatataagctataagctgttttcataagct 33405217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 44061134 - 44061077
Alignment:
Q  11 tagcaaaggataaaataatgtcaacttgttttgatataagctattagttgttttcata 68  Q
    ||||||| |||||||||| || || |||||||  |||||||||| |||||||||||||    
T  44061134 tagcaaaagataaaataaggttaaattgtttttctataagctataagttgttttcata 44061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 48397613 - 48397666
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||||| ||||| ||||||| || |||||||| |||||||||||| ||||    
T  48397613 gataaaataaagtcaaattgtttttatttaagctataagttgttttcattagct 48397666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 41057022 - 41057058
Alignment:
Q  36 ttgttttgatataagctattagttgttttcataagct 72  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  41057022 ttgttttcatataagctataagttgttttcataagct 41057058  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 4006676 - 4006734
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||| |||||||||| ||||| ||||||| ||||||||||| |||||||||||||||||    
T  4006676 caaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataagct 4006734  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 281956 - 281898
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||| |||||||||| ||||||||||||| ||||||||||| || ||| ||||||||||    
T  281956 caaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataagct 281898  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 29274340 - 29274281
Alignment:
Q  11 tagcaaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataag 70  Q
    ||||||| |||||||||| ||||| ||||||| ||||||||||| |  ||||||||||||    
T  29274340 tagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataag 29274281  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 2727947 - 2727906
Alignment:
Q  31 tcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||| |||| |||||||||||||| |||||||||||||||||    
T  2727947 tcaaattgtattgatataagctataagttgttttcataagct 2727906  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 14492264 - 14492320
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataag 70  Q
    |||| |||||||| | ||||| ||||||||||| ||||||| || ||||||||||||    
T  14492264 caaaagataaaatgaagtcaaattgttttgatacaagctataagctgttttcataag 14492320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 22742328 - 22742368
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctat 54  Q
    ||||||||||||||| ||||| ||||||| |||||||||||    
T  22742328 caaaggataaaataaagtcaaattgttttcatataagctat 22742368  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 11513860 - 11513918
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||| |||||||||| ||||| ||||||| ||||||||||| |||||||||||||||||    
T  11513860 caaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataagct 11513918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 40145424 - 40145483
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagctt 73  Q
    |||| |||||||||| ||||| ||||||| || |||| ||| ||||||||||||||||||    
T  40145424 caaaagataaaataaagtcaagttgtttttatgtaagttataagttgttttcataagctt 40145483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 5043663 - 5043610
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||||| |||||  |||||| ||||||||||  |||||||||||||||||    
T  5043663 gataaaataaagtcaaactgttttcatataagctagaagttgttttcataagct 5043610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 33942112 - 33942169
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagc 71  Q
    |||| |||||||||| |||||  |||||| || |||||||| ||||||||||||||||    
T  33942112 caaaagataaaataaagtcaaactgttttcatgtaagctataagttgttttcataagc 33942169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 42592301 - 42592358
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagc 71  Q
    |||| |||||||| | || |||||||||| ||||||||||| || |||||||||||||    
T  42592301 caaaagataaaattaagttaacttgttttcatataagctataagctgttttcataagc 42592358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 2416271 - 2416331
Alignment:
Q  10 gtagcaaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataag 70  Q
    |||||||| |||||||| | || || ||||||||||||||||||| || |||||| |||||    
T  2416271 gtagcaaaagataaaatgaagttaaattgttttgatataagctataagctgtttttataag 2416331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 23143086 - 23143030
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataag 70  Q
    |||| |||||||| |  |||| |||||||  ||||||||||||||||||||||||||    
T  23143086 caaaagataaaatcaaatcaaattgttttcttataagctattagttgttttcataag 23143030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 23554876 - 23554820
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataag 70  Q
    |||| |||||||| |  |||| |||||||  ||||||||||||||||||||||||||    
T  23554876 caaaagataaaatcaaatcaaattgttttcttataagctattagttgttttcataag 23554820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 35755602 - 35755554
Alignment:
Q  22 aaaataatgtcaacttgttttgatataagctattagttgttttcataag 70  Q
    ||||||| ||||| ||||||| || |||||||| |||||||||||||||    
T  35755602 aaaataaagtcaaattgttttcatgtaagctataagttgttttcataag 35755554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 25006135 - 25006084
Alignment:
Q  21 taaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||| ||||| ||||||| ||||||||||| |||||||||||||||||    
T  25006135 taaaataaagtcaaattgttttcatataagctataagttgttttcataagct 25006084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 25005889 - 25005847
Alignment:
Q  30 gtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    ||||||||||||| ||||||||||| |||||||||||||||||    
T  25005889 gtcaacttgttttcatataagctataagttgttttcataagct 25005847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 27738288 - 27738230
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||| |||||||||| ||||| ||||||| ||||||||||| | |||||||||||||||    
T  27738288 caaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataagct 27738230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 7218175 - 7218127
Alignment:
Q  21 taaaataatgtcaacttgttttgatataagctattagttgttttcataa 69  Q
    |||||||| ||||| ||||||| ||||||||||| ||||||||||||||    
T  7218175 taaaataaagtcaaattgttttcatataagctataagttgttttcataa 7218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 30371110 - 30371166
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataag 70  Q
    |||| ||||||||||  |||| ||||||| ||||||||||| |||||||||||||||    
T  30371110 caaaagataaaataaactcaaattgttttcatataagctataagttgttttcataag 30371166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 10581185 - 10581127
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    ||||||||||||||| |||||  | |||| || |||||||| |||||||||||||||||    
T  10581185 caaaggataaaataaagtcaaacttttttcatttaagctataagttgttttcataagct 10581127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 17269220 - 17269270
Alignment:
Q  22 aaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    ||||||| ||||| ||||||| |||||||| || |||||||||||||||||    
T  17269220 aaaataaagtcaaattgttttcatataagcaataagttgttttcataagct 17269270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 28467415 - 28467357
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||| |||||||||| ||||| || |||| ||||||||||  |||||||||||||||||    
T  28467415 caaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataagct 28467357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 49517032 - 49517090
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||| |||||||||| ||||| ||||||| || |||||||| || ||||||||||||||    
T  49517032 caaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataagct 49517090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 5592788 - 5592735
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||||| ||| | ||||| | ||||||||||| |||||||||||||||||    
T  5592788 gataaaataaagtcgaattgttgtcatataagctataagttgttttcataagct 5592735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 25479548 - 25479601
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||||| ||||| |||| || ||||| ||||| |||||||||||||||||    
T  25479548 gataaaataacgtcaaattgtcttcatataggctataagttgttttcataagct 25479601  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 49888734 - 49888787
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||||| ||  | |||||||  ||||||||||||||||||||||||||||    
T  49888734 gataaaataaagtttaattgttttcgtataagctattagttgttttcataagct 49888787  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 34770854 - 34770912
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||| |||||||||| ||||| ||||||| || |||||||| |||||||||||||||||    
T  34770854 caaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataagct 34770912  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 6509406 - 6509353
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||||| ||||| |||| || ||||||||||| || ||||||||||||||    
T  6509406 gataaaataaagtcaaattgtatttatataagctataagctgttttcataagct 6509353  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 9834875 - 9834839
Alignment:
Q  36 ttgttttgatataagctattagttgttttcataagct 72  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  9834875 ttgttttcatataagctataagttgttttcataagct 9834839  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 1417226 - 1417284
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||| |||||||||| ||||| ||||||| |||||||| || |||||||||||||||||    
T  1417226 caaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataagct 1417284  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 47046216 - 47046158
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    ||||||||||||||| ||||| ||||||| |||||||||   |||||||||||||||||    
T  47046216 caaaggataaaataaagtcaaattgttttcatataagctccgagttgttttcataagct 47046158  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 12110327 - 12110380
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||||| ||||| |||||||| |||||||||| || ||||||||||||||    
T  12110327 gataaaataaagtcaaattgttttggtataagctataagctgttttcataagct 12110380  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 45813288 - 45813236
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttca 66  Q
    |||| |||||||||| ||||||||||||| |||||| |||| |||||||||||    
T  45813288 caaaagataaaataaagtcaacttgttttcatataatctataagttgttttca 45813236  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 27548222 - 27548283
Alignment:
Q  11 tagcaaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    ||||||| |||||||||| ||| | ||||||| || |||||||| || ||||||||||||||    
T  27548222 tagcaaaagataaaataaagtctaattgttttcatttaagctataagctgttttcataagct 27548283  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 34205202 - 34205259
Alignment:
Q  15 aaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||||| ||| ||||| || |||| ||||||||||| |||||||||||||||||    
T  34205202 aaaggataaagtaaagtcaaattatttttatataagctataagttgttttcataagct 34205259  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 36539708 - 36539764
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataag 70  Q
    |||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |||||    
T  36539708 caaaagataaaataaagtcaacctgttttcatataagctataagttgtttttataag 36539764  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 9202860 - 9202800
Alignment:
Q  10 gtagcaaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataag 70  Q
    |||||||| |||||||||| || || ||||||| |||||||| || || ||||||||||||    
T  9202860 gtagcaaaagataaaataaagttaaattgttttcatataagcaataagctgttttcataag 9202800  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 10272534 - 10272482
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataagc 71  Q
    |||||||| | ||||| |||||||  |||||||||| ||||||||||||||||    
T  10272534 gataaaattaagtcaaattgttttcgtataagctataagttgttttcataagc 10272482  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 51630070 - 51630131
Alignment:
Q  11 tagcaaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    ||||||| |||||||||| || || ||||||||||||||||||| || | ||||||||||||    
T  51630070 tagcaaaagataaaataaagttaaattgttttgatataagctataagctattttcataagct 51630131  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 18630642 - 18630700
Alignment:
Q  14 caaaggataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||| |||||||||| ||||| | ||||| ||||||||||| ||||||||||| |||||    
T  18630642 caaaagataaaataaagtcaattggttttcatataagctataagttgttttcacaagct 18630700  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 2996540 - 2996593
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||||  ||||| ||||||| ||||||| ||| |||||||||||||||||    
T  2996540 gataaaatacagtcaaattgtttttatataagttataagttgttttcataagct 2996593  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 13949947 - 13949894
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataagct 72  Q
    |||||||||| ||||| ||||||| ||||||||||| ||||||||  |||||||    
T  13949947 gataaaataaagtcaaattgttttcatataagctataagttgtttgtataagct 13949894  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 49219107 - 49219156
Alignment:
Q  20 ataaaataatgtcaacttgttttgatataagctattagttgttttcataa 69  Q
    ||||||||| ||||| || |||| ||||||||||| ||||||||||||||    
T  49219107 ataaaataaagtcaaattattttcatataagctataagttgttttcataa 49219156  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 84240 - 84186
Alignment:
Q  11 tagcaaaggataaaataatgtcaacttgttttgatataagctattagttgttttc 65  Q
    ||||||| ||||||||||||| || ||||||| ||||||| ||| ||||||||||    
T  84240 tagcaaaagataaaataatgtaaaattgttttcatataagatatgagttgttttc 84186  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 27543 - 27593
Alignment:
Q  19 gataaaataatgtcaacttgttttgatataagctattagttgttttcataa 69  Q
    |||||||||| ||||| ||||||| |||||| |||| ||||||||||||||    
T  27543 gataaaataaagtcaaattgttttcatataaactataagttgttttcataa 27593  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 42608 - 42636
Alignment:
Q  44 atataagctattagttgttttcataagct 72  Q
    |||||||||||||||||||||||||||||    
T  42608 atataagctattagttgttttcataagct 42636  T

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