View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10538_low_4 (Length: 470)

Name: NF10538_low_4
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10538_low_4
NF10538_low_4
[»] chr1 (9 HSPs)
chr1 (23-452)||(50391910-50392343)
chr1 (306-420)||(11199914-11200030)
chr1 (356-420)||(43834538-43834602)
chr1 (344-419)||(52551269-52551344)
chr1 (384-426)||(39030152-39030194)
chr1 (379-427)||(6356867-6356916)
chr1 (361-425)||(4392238-4392302)
chr1 (348-420)||(11766028-11766100)
chr1 (343-419)||(38637540-38637616)
[»] chr5 (6 HSPs)
chr5 (348-418)||(27856164-27856234)
chr5 (343-426)||(28296072-28296155)
chr5 (356-403)||(18415618-18415665)
chr5 (342-418)||(15159178-15159254)
chr5 (348-418)||(21488819-21488889)
chr5 (354-418)||(33244869-33244933)
[»] chr8 (5 HSPs)
chr8 (379-428)||(19263309-19263358)
chr8 (385-428)||(38291857-38291900)
chr8 (355-420)||(5073024-5073089)
chr8 (346-395)||(2372874-2372923)
chr8 (343-408)||(1418035-1418100)
[»] chr7 (6 HSPs)
chr7 (353-438)||(38116719-38116804)
chr7 (360-428)||(27938807-27938875)
chr7 (353-416)||(25078144-25078207)
chr7 (355-426)||(45100226-45100297)
chr7 (343-420)||(33730103-33730180)
chr7 (379-420)||(6677091-6677132)
[»] chr3 (10 HSPs)
chr3 (379-428)||(50435-50484)
chr3 (359-420)||(42059846-42059907)
chr3 (361-420)||(43978626-43978685)
chr3 (365-418)||(43407680-43407733)
chr3 (354-418)||(37626642-37626706)
chr3 (379-426)||(15863149-15863196)
chr3 (348-390)||(28979035-28979077)
chr3 (364-425)||(23161955-23162016)
chr3 (357-417)||(46954880-46954940)
chr3 (357-425)||(51677343-51677411)
[»] chr2 (7 HSPs)
chr2 (356-425)||(19548187-19548256)
chr2 (356-439)||(8252621-8252704)
chr2 (356-420)||(10066574-10066638)
chr2 (356-428)||(34217580-34217652)
chr2 (354-405)||(40732555-40732606)
chr2 (385-428)||(6467003-6467046)
chr2 (379-428)||(20444184-20444233)
[»] scaffold1743 (1 HSPs)
scaffold1743 (379-428)||(193-242)
[»] chr6 (3 HSPs)
chr6 (357-426)||(14221276-14221345)
chr6 (355-412)||(28940816-28940873)
chr6 (354-403)||(33424561-33424610)
[»] chr4 (6 HSPs)
chr4 (379-428)||(22681170-22681219)
chr4 (356-426)||(11307624-11307694)
chr4 (356-426)||(26986701-26986771)
chr4 (357-417)||(21748248-21748308)
chr4 (385-428)||(42756772-42756815)
chr4 (364-426)||(20090557-20090619)
[»] scaffold0548 (1 HSPs)
scaffold0548 (355-426)||(4113-4184)
[»] scaffold0039 (1 HSPs)
scaffold0039 (355-426)||(29063-29136)


Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 23 - 452
Target Start/End: Complemental strand, 50392343 - 50391910
Alignment:
Q  23 atagcaatatcactcgtaacaaacctttcactagaaaggcttattgttgaacacccataatattatttattgtggagtttcttgatgtgagagagcaata 122  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392343 atagcaatatcactcataacaaacctttcactagaaaggcttattgttgaacacccataatattatttattgtggagtttcttgatgtgagagagcaata 50392244  T
Q  123 tccatgatcctgatgatattttcatattagagaaaacattcattgaatgaaaaacaatagaataaatggtaga----aaacaacaaagatagaatgaaga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||||||||    
T  50392243 tccatgatcctgatgatattttcatattagagaaaacattcattgaatgaaaaagaatagaataaatggtagctagcaaacaacaaagatagaatgaaga 50392144  T
Q  219 ggatgataatatcttaaaaggtatgcattagagaatccatggtggatattatatgattctaatatcacgttgagaactctggtaaaatgttggattttaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392143 ggatgataatatcttaaaaggtatgcattagagaatccatggtggatattatatgattctaatatcacgttgagaactctggtaaaatgttggattttaa 50392044  T
Q  319 gtatgagtgtttagtcgcacattgctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 418  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392043 gtatgagtggttagtcgcacattgctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 50391944  T
Q  419 gtcgtgtcaacctctattatgcttcgggaatatt 452  Q
    ||||||||||||||||||||||| ||||||||||    
T  50391943 gtcgtgtcaacctctattatgctccgggaatatt 50391910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 420
Target Start/End: Original strand, 11199914 - 11200030
Alignment:
Q  306 tgttggattttaagtatgagtgttta-gtcgcacattgc-tataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaag 403  Q
    |||||| |||||||| |||||| ||| ||| |||||||| ||| |||  |||||||||||||||||||||| | ||||||||||| ||||||| ||||||    
T  11199914 tgttgggttttaagtgtgagtggttaagtctcacattgcctatgaataggtaaaatgttggatatataagagaggtgactcatatgcctaatgccttaag 11200013  T
Q  404 gttttggatggagatgt 420  Q
    ||||||| |||||||||    
T  11200014 gttttgggtggagatgt 11200030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 43834538 - 43834602
Alignment:
Q  356 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 420  Q
    |||||||| |||||||||| | | ||| ||||||||||||||||||||||||| |||||||||||    
T  43834538 aaatgttgaatatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgt 43834602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 419
Target Start/End: Original strand, 52551269 - 52551344
Alignment:
Q  344 tataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatg 419  Q
    ||||||||||||||||||| ||||||| ||| ||||||| |||||| |||||| ||| || |||| |||| |||||    
T  52551269 tataaatgtgtaaaatgttagatatatgagagatgtgacacatatatctaatgccttgagattttagatgaagatg 52551344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 426
Target Start/End: Original strand, 39030152 - 39030194
Alignment:
Q  384 catatacctaatgtcttaaggttttggatggagatgtcgtgtc 426  Q
    ||||||||||||||||||||||||| | ||||||||| |||||    
T  39030152 catatacctaatgtcttaaggttttaggtggagatgtggtgtc 39030194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 6356916 - 6356867
Alignment:
Q  379 tgactcatatacctaatgtctt-aaggttttggatggagatgtcgtgtca 427  Q
    |||||||||||||| ||||||| |||||||||| ||||||||| ||||||    
T  6356916 tgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 6356867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 4392302 - 4392238
Alignment:
Q  361 ttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 425  Q
    |||||||||||| | | | ||| ||||||||| ||| |||||| |||||||||||||||| ||||    
T  4392302 ttggatatataacagaggagacccatatacctgatgccttaagattttggatggagatgtggtgt 4392238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 420
Target Start/End: Complemental strand, 11766100 - 11766028
Alignment:
Q  348 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 420  Q
    |||| |||||||||||||| ||||||| |  ||||  ||  |||||||| ||||||||||||| |||||||||    
T  11766100 aatgggtaaaatgttggatttataagagagttgacctattaacctaatgccttaaggttttgggtggagatgt 11766028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 419
Target Start/End: Original strand, 38637540 - 38637616
Alignment:
Q  343 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatg 419  Q
    |||||||||  |||||||||||  |||||||  | |||||  |||||||||||| |||||||| |||| ||||||||    
T  38637540 ctataaatggataaaatgttggccatataagtgaggtgacctatatacctaatgccttaaggtattgggtggagatg 38637616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 418
Target Start/End: Original strand, 27856164 - 27856234
Alignment:
Q  348 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 418  Q
    |||| |||||||||||||||||||||| | ||| ||||||||||||||| ||||| ||||||| |||||||    
T  27856164 aatgggtaaaatgttggatatataagagaggtggctcatatacctaatgccttaaagttttgggtggagat 27856234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 426
Target Start/End: Complemental strand, 28296155 - 28296072
Alignment:
Q  343 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 426  Q
    |||| |||| ||||||| ||| || ||||||| | ||||| |||||||||||| |||||||||||||| ||||||||| |||||    
T  28296155 ctatgaatgagtaaaatattgaatgtataagagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtgtc 28296072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 18415665 - 18415618
Alignment:
Q  356 aaatgttggatatataagatatgtgactcatatacctaatgtcttaag 403  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||    
T  18415665 aaatgttggatatataagataggagactcataaacctaatgtcttaag 18415618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 418
Target Start/End: Complemental strand, 15159254 - 15159178
Alignment:
Q  342 gctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 418  Q
    ||||||||||  |||||||||  || ||||||| |||||||||||||| ||||||| || | ||||||| |||||||    
T  15159254 gctataaatggataaaatgttacatgtataagagatgtgactcatatatctaatgttttgaagttttgggtggagat 15159178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 418
Target Start/End: Complemental strand, 21488889 - 21488819
Alignment:
Q  348 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 418  Q
    |||| |||||||||||||||||||||| ||||||| | || || | |||||||||| |||| | |||||||    
T  21488889 aatgagtaaaatgttggatatataagagatgtgacccttaaacttgatgtcttaagatttttggtggagat 21488819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 33244869 - 33244933
Alignment:
Q  354 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 418  Q
    |||||||||||||||||||||||||||| || ||||  ||||   |||| ||||||||| |||||    
T  33244869 taaaatgttggatatataagatatgtgaatcgtatatttaatacattaaagttttggatagagat 33244933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 19263358 - 19263309
Alignment:
Q  379 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 428  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  19263358 tgactcatatacctaatgtcttaaggtttaggatggagatgtggtgtcaa 19263309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 428
Target Start/End: Original strand, 38291857 - 38291900
Alignment:
Q  385 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 428  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  38291857 atatacctaatgtcttaaggttttggatgaagatgtcgtgtcaa 38291900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 5073024 - 5073089
Alignment:
Q  355 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 420  Q
    |||||||||||||||||||| | | | ||||||||| ||||| ||||||||||||| |||||||||    
T  5073024 aaaatgttggatatataagagaggcgtctcatatacgtaatgccttaaggttttgggtggagatgt 5073089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 2372874 - 2372923
Alignment:
Q  346 taaatgtgtaaaatgttggatatataagatatgtgactcatatacctaat 395  Q
    |||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  2372874 taaatgggtatattgttggatatataagatatgtgactcatatacataat 2372923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 1418100 - 1418035
Alignment:
Q  343 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggtttt 408  Q
    |||| |||| ||||||| ||||||||||||||||| ||| ||||||| | ||||| |||| |||||    
T  1418100 ctatgaatgagtaaaatattggatatataagatatttgattcatatatcaaatgttttaaagtttt 1418035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 438
Target Start/End: Complemental strand, 38116804 - 38116719
Alignment:
Q  353 gtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaacctctattat 438  Q
    ||||||| |||| ||||||||||||||||| | ||||| ||| |||||||||||||||||| |||||| || ||| ||||| ||||    
T  38116804 gtaaaatattggctatataagatatgtgacacgtatacataacgtcttaaggttttggatgaagatgtggtttcatcctctcttat 38116719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 360 - 428
Target Start/End: Original strand, 27938807 - 27938875
Alignment:
Q  360 gttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 428  Q
    ||||||||||||||| | | ||||||||||||||| | |||||||||||||||| |||||| |||||||    
T  27938807 gttggatatataagaaaggagactcatatacctaaagccttaaggttttggatgtagatgtggtgtcaa 27938875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 416
Target Start/End: Original strand, 25078144 - 25078207
Alignment:
Q  353 gtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggag 416  Q
    |||||||| | ||||||||||| |||||| |||||||| ||||||||||||||||||| |||||    
T  25078144 gtaaaatgatcgatatataagagatgtgattcatatacataatgtcttaaggttttgggtggag 25078207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 426
Target Start/End: Original strand, 45100226 - 45100297
Alignment:
Q  355 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 426  Q
    ||||||||| |||||||||| |  ||||||||||| |||||||||||| ||||| ||||||||||| |||||    
T  45100226 aaaatgttgaatatataagagagatgactcatataactaatgtcttaaagttttagatggagatgtggtgtc 45100297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 420
Target Start/End: Complemental strand, 33730180 - 33730103
Alignment:
Q  343 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 420  Q
    |||| |||| || |||||||||||||| |||| | ||||| |||| | ||||||  ||||||||||||||||||||||    
T  33730180 ctatgaatgggttaaatgttggatataaaagagaggtgacccatagagctaatgcattaaggttttggatggagatgt 33730103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 420
Target Start/End: Complemental strand, 6677132 - 6677091
Alignment:
Q  379 tgactcatatacctaatgtcttaaggttttggatggagatgt 420  Q
    ||||||||||||| |||||||||||||||| |||| ||||||    
T  6677132 tgactcatataccaaatgtcttaaggttttagatgaagatgt 6677091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 50435 - 50484
Alignment:
Q  379 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 428  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  50435 tgactcatatacctaatgtcttaaggtttgggatggagatgtggtgtcaa 50484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 42059907 - 42059846
Alignment:
Q  359 tgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 420  Q
    |||| ||||||||||| | | ||| | |||||||||||||||||||||||||||||||||||    
T  42059907 tgtttgatatataagagaggggacacttatacctaatgtcttaaggttttggatggagatgt 42059846  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 43978685 - 43978626
Alignment:
Q  361 ttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 420  Q
    |||||||||||||| | | |||||||||||||| || ||||||||||||| |||||||||    
T  43978685 ttggatatataagagaggagactcatatacctattgccttaaggttttgggtggagatgt 43978626  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 43407680 - 43407733
Alignment:
Q  365 atatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 418  Q
    |||||||||| | ||||||||||||||||||| | ||||||||||| |||||||    
T  43407680 atatataagaaaggtgactcatatacctaatgacgtaaggttttgggtggagat 43407733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 37626642 - 37626706
Alignment:
Q  354 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 418  Q
    ||||||||||||||||||||| | || |  |||||||||||||||||||| |||| | |||||||    
T  37626642 taaaatgttggatatataagagaggtcatacatatacctaatgtcttaagattttaggtggagat 37626706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 426
Target Start/End: Original strand, 15863149 - 15863196
Alignment:
Q  379 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 426  Q
    |||||| ||||| |||||||||||||||||| ||||||| ||||||||    
T  15863149 tgactcgtatacttaatgtcttaaggttttgaatggagacgtcgtgtc 15863196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 28979035 - 28979077
Alignment:
Q  348 aatgtgtaaaatgttggatatataagatatgtgactcatatac 390  Q
    |||||||||||| |||||||||||||| | |||||||||||||    
T  28979035 aatgtgtaaaatattggatatataagagaggtgactcatatac 28979077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 425
Target Start/End: Original strand, 23161955 - 23162016
Alignment:
Q  364 gatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 425  Q
    ||||||||||| | ||||||||||||||  ||| |||||| |||||| ||||||||| ||||    
T  23161955 gatatataagagaggtgactcatatacccgatgccttaagattttgggtggagatgtggtgt 23162016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 46954940 - 46954880
Alignment:
Q  357 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggaga 417  Q
    |||||| |||||||||||||||| |||||||||| ||| || |||| ||||| || |||||    
T  46954940 aatgtttgatatataagatatgtaactcatatacttaacgttttaaagttttagaaggaga 46954880  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 425
Target Start/End: Original strand, 51677343 - 51677411
Alignment:
Q  357 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 425  Q
    ||||||||||||| || | |  ||||||||||||||||||||||   ||||||| ||||||||| ||||    
T  51677343 aatgttggatatagaaaagagatgactcatatacctaatgtcttggagttttgggtggagatgtggtgt 51677411  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 19548187 - 19548256
Alignment:
Q  356 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 425  Q
    ||||||||||||||||||| | | ||| |||||| |||||||||||||||||||| ||||||||| ||||    
T  19548187 aaatgttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgt 19548256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 439
Target Start/End: Complemental strand, 8252704 - 8252621
Alignment:
Q  356 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaacctctattatg 439  Q
    ||||||||||||||||||| | || |||| ||||||||| | ||||| ||||||||||||||||| |||||  ||||| |||||    
T  8252704 aaatgttggatatataagagaggtaactcgtatacctaacgccttaaagttttggatggagatgtggtgtcgccctctcttatg 8252621  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 10066574 - 10066638
Alignment:
Q  356 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 420  Q
    ||||||||||||||||||||| | ||  ||||||||||||| |||||| |||||| |||||||||    
T  10066574 aaatgttggatatataagataggagatccatatacctaatgccttaagattttgggtggagatgt 10066638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 428
Target Start/End: Original strand, 34217580 - 34217652
Alignment:
Q  356 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 428  Q
    ||||| ||||||||||||||| |||||| ||||||||||   ||||||||||||||  ||||||| |||||||    
T  34217580 aaatggtggatatataagataggtgacttatatacctaactccttaaggttttggaatgagatgtggtgtcaa 34217652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 40732606 - 40732555
Alignment:
Q  354 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggt 405  Q
    ||||||||| ||||||||||||| ||| || |||||||||||||||||||||    
T  40732606 taaaatgtttgatatataagataagtggcttatatacctaatgtcttaaggt 40732555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Original strand, 6467003 - 6467046
Alignment:
Q  385 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 428  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||    
T  6467003 atataactaatgtcttaagtttttggatggagatgtggtgtcaa 6467046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 20444184 - 20444233
Alignment:
Q  379 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 428  Q
    |||||||||||||||||| |||||||||| ||||| |||| | |||||||    
T  20444184 tgactcatatacctaatgccttaaggtttaggatgaagatatggtgtcaa 20444233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 242 - 193
Alignment:
Q  379 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 428  Q
    ||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  242 tgactcatatatctaatgtcttaaggtttaggatggagatgtggtgtcaa 193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 426
Target Start/End: Original strand, 14221276 - 14221345
Alignment:
Q  357 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 426  Q
    |||||||||| ||||||| | |||||||||  | ||||||| |||||||||||||||||||||| |||||    
T  14221276 aatgttggatttataagagaggtgactcattaatctaatgtattaaggttttggatggagatgtggtgtc 14221345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 28940873 - 28940816
Alignment:
Q  355 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggat 412  Q
    ||||||||||| |||||||| | | ||||| |||||||||||||||||| ||||||||    
T  28940873 aaaatgttggacatataagagaagagactcgtatacctaatgtcttaagattttggat 28940816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 33424610 - 33424561
Alignment:
Q  354 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaag 403  Q
    ||||||| | ||||||||||| |||||||||||||||| |||||||||||    
T  33424610 taaaatgatagatatataagagatgtgactcatataccaaatgtcttaag 33424561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 22681219 - 22681170
Alignment:
Q  379 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 428  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  22681219 tgactcatatacctaatgtcttaaggtttagggtggagatgtggtgtcaa 22681170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 11307694 - 11307624
Alignment:
Q  356 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 426  Q
    ||||||||||||||| ||| | | ||| ||||||||| ||||||||| ||||||| ||||||||| |||||    
T  11307694 aaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 11307624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 26986771 - 26986701
Alignment:
Q  356 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 426  Q
    |||||||| |||||| ||| |  |||| ||||||| ||||| ||||||||||||||||||||||| |||||    
T  26986771 aaatgttgtatatattagaaaaatgacccatatacataatgccttaaggttttggatggagatgtggtgtc 26986701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 21748248 - 21748308
Alignment:
Q  357 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggaga 417  Q
    ||||||| |||||||| | | ||||||||||| |||||||||||||  |||||||||||||    
T  21748248 aatgttgaatatataaaagacgtgactcatatgcctaatgtcttaaaattttggatggaga 21748308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 42756815 - 42756772
Alignment:
Q  385 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 428  Q
    |||||||||| |||||||||||||||||| |||||| |||||||    
T  42756815 atatacctaaagtcttaaggttttggatgaagatgtggtgtcaa 42756772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 20090619 - 20090557
Alignment:
Q  364 gatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 426  Q
    ||||||||||| | |||||| ||||||||||||  ||| |||||||||||| || ||||||||    
T  20090619 gatatataagagaggtgacttatatacctaatgcattagggttttggatggcgacgtcgtgtc 20090557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 426
Target Start/End: Complemental strand, 4184 - 4113
Alignment:
Q  355 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 426  Q
    |||||||||||||||| ||| | | ||| ||||||||| ||||||||| ||||||| ||||||||| |||||    
T  4184 aaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 4113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 426
Target Start/End: Original strand, 29063 - 29136
Alignment:
Q  355 aaaatgttgg--atatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 426  Q
    ||||||||||  |||||||||| | | |||||||||| || |||||||||| |||||| ||||||||| |||||    
T  29063 aaaatgttggatatatataagagaggggactcatatatctgatgtcttaagattttgggtggagatgtggtgtc 29136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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