View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10538_low_41 (Length: 228)

Name: NF10538_low_41
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10538_low_41
NF10538_low_41
[»] chr7 (4 HSPs)
chr7 (15-220)||(42029828-42030033)
chr7 (105-178)||(10325121-10325194)
chr7 (131-171)||(717501-717541)
chr7 (133-185)||(40901853-40901905)
[»] chr1 (3 HSPs)
chr1 (83-185)||(51080720-51080822)
chr1 (133-185)||(2536530-2536582)
chr1 (133-185)||(11351645-11351697)
[»] chr2 (2 HSPs)
chr2 (83-185)||(40287065-40287167)
chr2 (133-185)||(29894369-29894421)
[»] chr3 (3 HSPs)
chr3 (122-178)||(38998907-38998963)
chr3 (131-178)||(27265807-27265854)
chr3 (133-185)||(36684916-36684968)
[»] chr6 (3 HSPs)
chr6 (131-178)||(13757556-13757603)
chr6 (131-178)||(19047096-19047143)
chr6 (133-185)||(942704-942756)
[»] chr5 (2 HSPs)
chr5 (131-185)||(14856970-14857024)
chr5 (83-167)||(32163040-32163124)
[»] chr8 (2 HSPs)
chr8 (130-175)||(14541224-14541269)
chr8 (82-174)||(11911423-11911515)
[»] chr4 (2 HSPs)
chr4 (131-174)||(2087389-2087432)
chr4 (133-185)||(1394136-1394188)
[»] scaffold0041 (1 HSPs)
scaffold0041 (133-185)||(48113-48165)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 42030033 - 42029828
Alignment:
Q  15 atgaacattagaccttcaactttataatttggattttgctctcgactttaagaatgttgtagactcatttggttgtattatttctgcatatagacaaatg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42030033 atgaacattagaccttcaactttataatttggattttgctctcgactttaagaatgttgtagactcatttggttgtattatttctgcatatagacagatg 42029934  T
Q  115 ttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaattgatacagctagtcccatataattttttat 214  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||| ||| ||    
T  42029933 ttccataatagtttcaaaaactctcatgttgaatttaatatgaggcaaattaatggggtcgctcgtgaattgatacggttagtcctatataatgtttgat 42029834  T
Q  215 gatgat 220  Q
    ||||||    
T  42029833 gatgat 42029828  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 10325194 - 10325121
Alignment:
Q  105 tagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 178  Q
    ||||||| |||| |||||| |||| || ||||||||||| |||||||||| ||||||||| |||| ||||||||    
T  10325194 tagacaattgttacttaattgtttaaacaactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctc 10325121  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 717501 - 717541
Alignment:
Q  131 aaaactctcatgttgagtttaatatgaggcaaactaatggg 171  Q
    |||||||||||||||||||||||| ||| ||| ||||||||    
T  717501 aaaactctcatgttgagtttaataggagacaagctaatggg 717541  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 40901905 - 40901853
Alignment:
Q  133 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 185  Q
    ||||||||||| ||||| |||| |||||||||||||  |||||||| ||||||    
T  40901905 aactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaatt 40901853  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 51080822 - 51080720
Alignment:
Q  83 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtga 182  Q
    |||||||||||||| |||||| ||||||  |||| |   |||||||  ||||||||||||| |||||||||| ||||||| ||||||||||||||| |||    
T  51080822 ttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatga 51080723  T
Q  183 att 185  Q
    |||    
T  51080722 att 51080720  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 2536582 - 2536530
Alignment:
Q  133 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 185  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  2536582 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 2536530  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 11351697 - 11351645
Alignment:
Q  133 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 185  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  11351697 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 11351645  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 40287167 - 40287065
Alignment:
Q  83 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtga 182  Q
    |||||||||||||| |||||| ||||||  |||| |   |||||||  |||||||||||||  ||||||||||||||||| ||||||||||| ||| |||    
T  40287167 ttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcaagtttaatatgaggcaagctaatggggtcactcatga 40287068  T
Q  183 att 185  Q
    |||    
T  40287067 att 40287065  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 29894421 - 29894369
Alignment:
Q  133 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 185  Q
    ||||||||||| ||||| |||| ||||||| | ||||||||||||| ||||||    
T  29894421 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaatt 29894369  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 38998907 - 38998963
Alignment:
Q  122 atagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 178  Q
    |||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  38998907 atagttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctc 38998963  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 27265807 - 27265854
Alignment:
Q  131 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 178  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  27265807 aaaactctcatgttgagtttaataagagacaaactaatgaggtcgctc 27265854  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 36684916 - 36684968
Alignment:
Q  133 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 185  Q
    ||||||||||| ||||| |||| ||||||| ||||||||||||||| ||||||    
T  36684916 aactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaatt 36684968  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 13757603 - 13757556
Alignment:
Q  131 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 178  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  13757603 aaaactctcatgttgagtttaataagaagcaaactaatgaggtcgctc 13757556  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 19047096 - 19047143
Alignment:
Q  131 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctc 178  Q
    ||||||||||||| |||||||||| ||||||| |||||| ||||||||    
T  19047096 aaaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctc 19047143  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 942704 - 942756
Alignment:
Q  133 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 185  Q
    |||||| |||| ||||| |||| ||||||| | ||||||||||||||||||||    
T  942704 aactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaatt 942756  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 14857024 - 14856970
Alignment:
Q  131 aaaactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 185  Q
    ||||||||||||| |||||||||||||||||||| |||| | |||||| ||||||    
T  14857024 aaaactctcatgtcgagtttaatatgaggcaaacaaatgtgatcgctcatgaatt 14856970  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 32163040 - 32163124
Alignment:
Q  83 ttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaa 167  Q
    |||||||||||||| |||| | ||||||  |||| |   |||||||  ||||||||||| | |||||||||| ||||||||||||    
T  32163040 ttggttgtattattactgcctgtagacagttgtttcaggatagttttcaaaactctcatatcgagtttaataggaggcaaactaa 32163124  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 14541224 - 14541269
Alignment:
Q  130 aaaaactctcatgttgagtttaatatgaggcaaactaatggggtcg 175  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||    
T  14541224 aaaaactctcgtattgagtttaatatgaggcaaactaatgtggtcg 14541269  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 11911515 - 11911423
Alignment:
Q  82 tttggttgtattatttctgcatatagacaaatgttccttaatagtttcaaaaactctcatgttgagtttaatatgaggcaaactaatggggtc 174  Q
    ||||||||||| || | || || |||||||  |||  ||||||||||  ||||||||||||| ||||| |||| |||| |||| |||||||||    
T  11911515 tttggttgtatcatatttgtatgtagacaatagttaattaatagttttcaaaactctcatgtcgagttcaataggaggtaaacgaatggggtc 11911423  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 2087432 - 2087389
Alignment:
Q  131 aaaactctcatgttgagtttaatatgaggcaaactaatggggtc 174  Q
    |||||||||||||| | ||||||| |||||||||||||||||||    
T  2087432 aaaactctcatgttaaatttaatacgaggcaaactaatggggtc 2087389  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 1394136 - 1394188
Alignment:
Q  133 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 185  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||| || ||||||    
T  1394136 aactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaatt 1394188  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 48113 - 48165
Alignment:
Q  133 aactctcatgttgagtttaatatgaggcaaactaatggggtcgctcgtgaatt 185  Q
    ||||||||||| ||||| |||| |||||||||||||  |||||||| ||||||    
T  48113 aactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaatt 48165  T

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