View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_43 (Length: 223)
Name: NF10538_low_43
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_43 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 37299853 - 37300057
Alignment:
| Q |
1 |
agaaggaacatgagaggttacatcaaattaaagctacaacttaatcataatcaaaatgatatcactaacaactataaatatatagtcttagaaggtgaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37299853 |
agaaggaacatgagaggttacatcaaattaaagctacaacttaatcataatcaaaatgatatcactaacaactataaatatatagtcttagaaggtgaag |
37299952 |
T |
|
| Q |
101 |
agaatatcttaattttagctcttactccctattgtcttaaatataagctaaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgactttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37299953 |
agaatatcttaattttagctcttactccctattgtcctaaatataagctaaaaagtcgaatgtatttagttgaaatttgaaccaaatacatttgactttt |
37300052 |
T |
|
| Q |
201 |
tattt |
205 |
Q |
| |
|
||||| |
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|
| T |
37300053 |
tattt |
37300057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 4931586 - 4931628
Alignment:
| Q |
159 |
aatgtatttagtttaaatttgaaccaaatacatttgacttttt |
201 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
4931586 |
aatgtatttgatttaaatttgaatcaaatacatttgacttttt |
4931628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 32910692 - 32910627
Alignment:
| Q |
135 |
tcttaaatataagctaaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgacttttt |
201 |
Q |
| |
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|||||||||||| | |||||||| ||| ||||| |||||||||| ||||||||||||||||||||| |
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| T |
32910692 |
tcttaaatataatc-aaaaagtcaaatatatttgatttaaatttggaccaaatacatttgacttttt |
32910627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 46170398 - 46170459
Alignment:
| Q |
138 |
taaatataagctaaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgactttt |
200 |
Q |
| |
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|||||||||| ||||||||| |||||||||| | |||||||| ||||||||||||| |||||| |
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| T |
46170398 |
taaatataag-taaaaagtcaaatgtatttaatctaaatttggaccaaatacattttactttt |
46170459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 48508574 - 48508622
Alignment:
| Q |
153 |
aagtcgaatgtatttagtttaaatttgaaccaaatacatttgacttttt |
201 |
Q |
| |
|
||||| |||||||||||| |||||||||| |||||| ||||||| |||| |
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|
| T |
48508574 |
aagtcaaatgtatttagtataaatttgaatcaaatatatttgacatttt |
48508622 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 49110885 - 49110845
Alignment:
| Q |
159 |
aatgtatttagtttaaatttgaaccaaatacatttgacttt |
199 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||||||||||| |
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|
| T |
49110885 |
aatgtttttagtttaaatttgaactaaatgcatttgacttt |
49110845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 132676 - 132627
Alignment:
| Q |
150 |
aaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgacttt |
199 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||| ||||||||||||||||||| |
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|
| T |
132676 |
aaaaagtcaaatgtatttggtttaaagttggaccaaatacatttgacttt |
132627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 142217 - 142177
Alignment:
| Q |
154 |
agtcgaatgtatttagtttaaatttgaaccaaatacatttg |
194 |
Q |
| |
|
|||| ||||||||| ||||||||||||| |||||||||||| |
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|
| T |
142217 |
agtcaaatgtatttggtttaaatttgaatcaaatacatttg |
142177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 22664029 - 22664086
Alignment:
| Q |
134 |
gtcttaaatataagctaaaaagtcgaatgtatttagtttaaatttgaaccaaatacat |
191 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||||||| ||||||| ||||||||||| |
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|
| T |
22664029 |
gtctcaaatataagcaaaaaagtcttatgtatttagttcaaatttggaccaaatacat |
22664086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 22668508 - 22668565
Alignment:
| Q |
134 |
gtcttaaatataagctaaaaagtcgaatgtatttagtttaaatttgaaccaaatacat |
191 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||| ||||||| ||||||||||| |
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|
| T |
22668508 |
gtctcaaatataaggaaaaaagtcttatgtatttagttcaaatttggaccaaatacat |
22668565 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 6965343 - 6965394
Alignment:
| Q |
150 |
aaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgacttttt |
201 |
Q |
| |
|
|||||||| |||||||||| || ||||||| ||||||||||||||| ||||| |
|
|
| T |
6965343 |
aaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgatttttt |
6965394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 29037131 - 29037079
Alignment:
| Q |
149 |
taaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgacttttt |
201 |
Q |
| |
|
||||||||||||| ||| | || |||| |||||||||||||||||||||||| |
|
|
| T |
29037131 |
taaaaagtcgaatatatctggtccaaatatgaaccaaatacatttgacttttt |
29037079 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 26901498 - 26901547
Alignment:
| Q |
150 |
aaaaagtcgaatgtatttagtttaaatttgaaccaaatacatttgacttt |
199 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||||||||| ||||| |
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|
| T |
26901498 |
aaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaacttt |
26901547 |
T |
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