View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10538_low_44 (Length: 220)
Name: NF10538_low_44
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_44 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 4522235 - 4522424
Alignment:
| Q |
22 |
atatatatgttaaagaaaatcggtctttacaaacca-----tagagacaatgcatttctctggccagcaacataagctaacataacaacccactaacaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4522235 |
atatatatgttaaagaaaatcggtctttacaaaccataccatagagacaatgcatttctctggccagcaacataagctaacataacaacccactaacaca |
4522334 |
T |
|
| Q |
117 |
tgaatccaacctataattagaatttagaagtacttaaaaactgctccaatattaataactaggcttactggtcttctttctcttcctctc |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4522335 |
tgaatgcaacctataattagaatttagaagtacttaaaaactgctccaatattaataactaggcttactggtcttctttctcttcctctc |
4522424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 4524612 - 4524692
Alignment:
| Q |
62 |
gacaatgcatttctctggccagcaacataagct------aacataacaacccacta--acacatgaatccaacctataatt |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
4524612 |
gacaatgcatttctctggccagcaacataaactacgcaaaatataacaactcactaacacacatgattccaacctataatt |
4524692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University