View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10538_low_45 (Length: 220)

Name: NF10538_low_45
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10538_low_45
NF10538_low_45
[»] chr5 (2 HSPs)
chr5 (20-208)||(1759372-1759557)
chr5 (20-76)||(1754206-1754261)
[»] chr4 (23 HSPs)
chr4 (20-83)||(27480021-27480084)
chr4 (20-82)||(27474012-27474074)
chr4 (20-85)||(27513731-27513796)
chr4 (20-83)||(27505659-27505722)
chr4 (20-83)||(27526069-27526132)
chr4 (20-105)||(27487103-27487188)
chr4 (22-82)||(27516567-27516627)
chr4 (20-83)||(27460598-27460661)
chr4 (20-83)||(27502092-27502155)
chr4 (20-83)||(27523360-27523423)
chr4 (20-70)||(27444764-27444814)
chr4 (20-82)||(27466941-27467003)
chr4 (109-167)||(27474102-27474160)
chr4 (20-83)||(27469580-27469643)
chr4 (109-180)||(27469683-27469754)
chr4 (20-70)||(27431118-27431168)
chr4 (20-81)||(27567375-27567436)
chr4 (20-68)||(27557609-27557657)
chr4 (20-83)||(27476807-27476870)
chr4 (23-70)||(27554432-27554479)
chr4 (20-70)||(27498535-27498585)
chr4 (26-83)||(27500295-27500352)
chr4 (20-69)||(27501437-27501486)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 1759372 - 1759557
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatcagcagctctctgaagatatcaaaagaccaattttt 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||    
T  1759372 gtggtctcaccattctttgcagagaagaagttttcttagatatcacttctcacttgaattgaatcagc---tctctgaaaatatcaaaagaccaattttt 1759468  T
Q  120 gtacaactttagtttcttaccttcaaaagatttttacttttcttgttacttgaatgtaaaacttcatatttctataattcttctctgat 208  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1759469 gtagaactttagtttcttaccttcaaaagatttttacttttcttgttacttggatgtaaaacttcatatttctataattcttctctgat 1759557  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 1754261 - 1754206
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttga 76  Q
    |||||||||| |||| ||| |||||| || ||||||||||||||||||||| |||||    
T  1754261 gtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgcttga 1754206  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 27480021 - 27480084
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 83  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  27480021 gtggtctcaccattccttgcagagaagacattttcttagatattaattctcacttgaattgaat 27480084  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 27474012 - 27474074
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 82  Q
    ||||||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||||||    
T  27474012 gtggtctcaccattccttgcggagaagacgttttcttagacatcacttctcgcttgaattgaa 27474074  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 27513796 - 27513731
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatca 85  Q
    |||||||||| |||| |||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  27513796 gtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaattgaatca 27513731  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 27505722 - 27505659
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 83  Q
    |||||||||| |||| ||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  27505722 gtggtctcactattccttgcagagaagagattttcttagatatcatttctcacttgaattgaat 27505659  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 27526132 - 27526069
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 83  Q
    |||||||||| |||| |||||||||||||||||||||||| ||||||||||  |||||||||||    
T  27526132 gtggtctcactattccttgcagagaagacgttttcttagagatcacttctcgtttgaattgaat 27526069  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 27487103 - 27487188
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaatcagcagctctctgaagatatca 105  Q
    ||||||| || |||| ||||| ||||||| ||||||||||||| |||||||||||||||||||| |  || ||| |||||||||||    
T  27487103 gtggtcttactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaattattagttctttgaagatatca 27487188  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 27516627 - 27516567
Alignment:
Q  22 ggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 82  Q
    |||||||| |||| ||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  27516627 ggtctcactattccttgcaaagaagaagttttcttagatatcacttctaacttgaattgaa 27516567  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 27460598 - 27460661
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 83  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||||| |||||||| | ||||||    
T  27460598 gtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaat 27460661  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 27502155 - 27502092
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 83  Q
    ||||||| || |||| ||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  27502155 gtggtctaactattccttgcagagaagacattttcttagatatcacctctcacttaaattgaat 27502092  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 27523423 - 27523360
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 83  Q
    ||||||| || |||| ||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  27523423 gtggtctaactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaat 27523360  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 27444814 - 27444764
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 70  Q
    |||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  27444814 gtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 27444764  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 27466941 - 27467003
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 82  Q
    |||||||||| |||| |||||||||||| ||||||||||| |||||||||  |||||||||||    
T  27466941 gtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaattgaa 27467003  T

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Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 27474102 - 27474160
Alignment:
Q  109 gaccaatttttgtacaactttagtttcttaccttcaaaagatttttacttttcttgtta 167  Q
    ||||||||||||||  |||||||||||| |||||||||||||||| |||||| ||||||    
T  27474102 gaccaatttttgtagcactttagtttctaaccttcaaaagattttcacttttgttgtta 27474160  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 27469580 - 27469643
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 83  Q
    ||||||| || |||| ||||||||||||  |||||||||||||||| |||||||| ||||||||    
T  27469580 gtggtctaactattccttgcagagaagaaattttcttagatatcacctctcacttcaattgaat 27469643  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 27469683 - 27469754
Alignment:
Q  109 gaccaatttttgtacaactttagtttcttaccttcaaaagatttttacttttcttgttacttgaatgtaaaa 180  Q
    |||| |||||||||  ||||||||||| ||||||||||||||||| |||||| |||| | ||| ||||||||    
T  27469683 gacccatttttgtagcactttagtttcataccttcaaaagattttcacttttgttgtaatttggatgtaaaa 27469754  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 27431168 - 27431118
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 70  Q
    |||||||||| |||| |||||||||||||||||||||| |||| |||||||    
T  27431168 gtggtctcacaattccttgcagagaagacgttttcttaaatattacttctc 27431118  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 27567375 - 27567436
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattga 81  Q
    |||||||||| |||| |||||| ||||| | |||||||||  ||||||||||||||||||||    
T  27567375 gtggtctcacaattccttgcagcgaagatgctttcttagaactcacttctcacttgaattga 27567436  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 27557609 - 27557657
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttc 68  Q
    |||||||||| ||||  ||||||||||| ||||||||||||||||||||    
T  27557609 gtggtctcactattccatgcagagaagatgttttcttagatatcacttc 27557657  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 27476807 - 27476870
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 83  Q
    ||||||| || |||| ||||||||||||| ||||||| ||||| || |||||||| ||||||||    
T  27476807 gtggtctaactattccttgcagagaagacattttcttggatattacctctcacttaaattgaat 27476870  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 27554432 - 27554479
Alignment:
Q  23 gtctcaccattctttgcagagaagacgttttcttagatatcacttctc 70  Q
    ||||||| |||| ||| ||||||||||||||||||||||| |||||||    
T  27554432 gtctcacaattccttgtagagaagacgttttcttagatattacttctc 27554479  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 27498535 - 27498585
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 70  Q
    |||||||||| |||| |||| |||||||| | |||||||||||||||||||    
T  27498535 gtggtctcactattccttgcggagaagacatgttcttagatatcacttctc 27498585  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 27500352 - 27500295
Alignment:
Q  26 tcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 83  Q
    |||| |||| ||||||||||||| ||||||||||  ||||||||  ||||||||||||    
T  27500352 tcactattccttgcagagaagaccttttcttagaattcacttcttgcttgaattgaat 27500295  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 27501437 - 27501486
Alignment:
Q  20 gtggtctcaccattctttgcagagaagacgttttcttagatatcacttct 69  Q
    |||||||||| |||| ||| ||||||||| | ||||||||||||||||||    
T  27501437 gtggtctcactattccttgtagagaagacatgttcttagatatcacttct 27501486  T

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