View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_47 (Length: 218)
Name: NF10538_low_47
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 11890393 - 11890581
Alignment:
| Q |
12 |
gagatgaagatgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctc |
111 |
Q |
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| T |
11890393 |
gagatgaagatgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctc |
11890492 |
T |
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| Q |
112 |
aaaactgcaattcagagttgaaaatttagtcttattttgaaccnnnnnnngtttaataatttactcataaatagaaacatggatataat |
200 |
Q |
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| T |
11890493 |
aaaactgcaattcagagttgaaaatttagtcttattttgaaccaaaaaaagtttaataatttactcataaatagaaacatggatataat |
11890581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 11902737 - 11902925
Alignment:
| Q |
12 |
gagatgaagatgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902737 |
gagatgaagatgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctc |
11902836 |
T |
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| Q |
112 |
aaaactgcaattcagagttgaaaatttagtcttattttgaaccnnnnnnngtttaataatttactcataaatagaaacatggatataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11902837 |
aaaactgcaattcagagttgaaaatttagtcttattttgaaccaaaaaaagtttaataatttactcataaatagaaacatggatataat |
11902925 |
T |
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