View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10538_low_48 (Length: 212)

Name: NF10538_low_48
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10538_low_48
NF10538_low_48
[»] chr1 (4 HSPs)
chr1 (30-206)||(2451865-2452041)
chr1 (1-33)||(19055643-19055675)
chr1 (1-29)||(37619699-37619727)
chr1 (1-33)||(41677220-41677252)
[»] chr8 (1 HSPs)
chr8 (1-31)||(12898815-12898845)
[»] chr4 (1 HSPs)
chr4 (1-34)||(51986197-51986230)
[»] scaffold0098 (1 HSPs)
scaffold0098 (1-29)||(49450-49478)
[»] chr7 (1 HSPs)
chr7 (1-29)||(44895460-44895488)
[»] chr3 (2 HSPs)
chr3 (1-33)||(44445449-44445481)
chr3 (1-33)||(44856108-44856140)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 2452041 - 2451865
Alignment:
Q  30 ttttggaagacacggttttgttttgcatggattgttgtgcgtgagtagaccaccaccagcaatgtataaatataaatccaatgactttgccatttgtttg 129  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2452041 ttttggaagacacggttttgttttgcattgattgttgtgcgtgagtagaccaccaccagcaatatataaatataaatccaatgactttgccatttgtttg 2451942  T
Q  130 acaaattttcatcaataaagatgttggattcattccatatcaaagccatacaaggagggatgccaacgacacccttt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2451941 acaaattttcatcaataaagatgttggattcattccatatcaaagccatacaaggagggataccaacgacacccttt 2451865  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19055675 - 19055643
Alignment:
Q  1 catatatggatgttcaaataacataactctttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  19055675 catatatggatgttcaaataacacaactctttt 19055643  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37619699 - 37619727
Alignment:
Q  1 catatatggatgttcaaataacataactc 29  Q
    |||||||||||||||||||||||||||||    
T  37619699 catatatggatgttcaaataacataactc 37619727  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41677252 - 41677220
Alignment:
Q  1 catatatggatgttcaaataacataactctttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  41677252 catatatggatgttcaaataacacaactctttt 41677220  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 12898845 - 12898815
Alignment:
Q  1 catatatggatgttcaaataacataactctt 31  Q
    |||||||||||||||||||||||||||||||    
T  12898845 catatatggatgttcaaataacataactctt 12898815  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 51986197 - 51986230
Alignment:
Q  1 catatatggatgttcaaataacataactcttttg 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  51986197 catatatggatgttcaaataacacaactcttttg 51986230  T

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Target: scaffold0098 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 49450 - 49478
Alignment:
Q  1 catatatggatgttcaaataacataactc 29  Q
    |||||||||||||||||||||||||||||    
T  49450 catatatggatgttcaaataacataactc 49478  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 44895488 - 44895460
Alignment:
Q  1 catatatggatgttcaaataacataactc 29  Q
    |||||||||||||||||||||||||||||    
T  44895488 catatatggatgttcaaataacataactc 44895460  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44445449 - 44445481
Alignment:
Q  1 catatatggatgttcaaataacataactctttt 33  Q
    ||||||| |||||||||||||||||||||||||    
T  44445449 catatatcgatgttcaaataacataactctttt 44445481  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44856108 - 44856140
Alignment:
Q  1 catatatggatgttcaaataacataactctttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  44856108 catatatggatgttcaaataacacaactctttt 44856140  T

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