View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_49 (Length: 209)
Name: NF10538_low_49
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 45514081 - 45514252
Alignment:
| Q |
23 |
ccaggtccaacattctcaaactcaacataagtaactttatcagtggccagacctgacatcccttcccaacctctaggatcaaccattgaatctatgaaac |
122 |
Q |
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| T |
45514081 |
ccaggtccaacattctcaaactcaacataagtaactttatcagtggccagacctgacatcccttcccaacctcttggatcaaccattgaatctatgaaac |
45514180 |
T |
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| Q |
123 |
aatgcaatatagcaactgttgaatatgccctccaaggacgacctaatgttgcatgcacctctgactttctct |
194 |
Q |
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| T |
45514181 |
aatgcaatatagcaactgttgaatatgccctccaaggacgacctaatgttgcatgcacctctgactttctct |
45514252 |
T |
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Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 43699279 - 43699442
Alignment:
| Q |
23 |
ccaggtccaacattctcaaactcaacataagtaactttatcagtggccagacctgacatcccttcccaacctctaggatcaaccattgaatctatgaaac |
122 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||| ||| | || |||| |||||||||||||| ||| || | ||||||||||||| |
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| T |
43699279 |
ccaggtccaacattctcaaactccacataagtaaccttatcattgggttgtccctccatctgttcccaacctctagtatccacaaaggaatctatgaaac |
43699378 |
T |
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| Q |
123 |
aatgcaatatagcaactgttgaatatgccctccaaggacgacctaatgttgcatgcacctctga |
186 |
Q |
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| T |
43699379 |
attgcaatatagccactgtggaatatgccctccaaggacgacccaatgttccacgcacctctga |
43699442 |
T |
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