View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10538_low_5 (Length: 457)
Name: NF10538_low_5
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 7 - 448
Target Start/End: Original strand, 30056240 - 30056681
Alignment:
| Q |
7 |
tatgtctcgcttcattcttatatatcccttctctccccatctaatgccccatgaattctttactaaccaatatttagtaccgtcattcgatgtaccataa |
106 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30056240 |
tatgtctcgcttcattcttatatatctcttctctccccatctaatgccccatgaattctttactaaccaatatttagtaccgtcattcgatgtaccataa |
30056339 |
T |
|
| Q |
107 |
ccaactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttatatcgataccaacgg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056340 |
ccaactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttatatcgataccaacgg |
30056439 |
T |
|
| Q |
207 |
aaaccggttgattggccacaactttaagcagtgaatcctcgctatttctagggacttgctcgtagctcttaatctgaacttggcgacgaaccttcttact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30056440 |
aaaccggttgattggccacaactttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaacttggcgactaaccttcttact |
30056539 |
T |
|
| Q |
307 |
attatttcctttaactcctctgtacggataacttgcttctgtggcaattccaccgtttactaagacgaattcaaaagcatcaatcaaataaccaccgttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30056540 |
attatttcctttaactcctctgtacggataacttgcttctgtggcaattccaccgttttctaagacgaattcaaaagcatcaatcaaataaccaccgttg |
30056639 |
T |
|
| Q |
407 |
catccatttgtccaattacttctgacatgatccacaggttct |
448 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
30056640 |
catccatttgtccaattacttctgacacgatccacaagttct |
30056681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 74 - 427
Target Start/End: Complemental strand, 29746986 - 29746636
Alignment:
| Q |
74 |
caatatttagtaccgtcattcgatgtaccataaccaactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaa |
173 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29746986 |
caatatttagtacagtcattcgatgtaccatagccaactattgttacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaa |
29746887 |
T |
|
| Q |
174 |
atctgatcataccacttatatcgataccaacggaaaccggttgattggccacaactttaagcagtgaatcctcgctatttctagggacttgctcgtagct |
273 |
Q |
| |
|
|| ||| |||||| || ||||| ||| ||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| |
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|
| T |
29746886 |
atttgagcatacctctcatatcaatattaaccgaaaccggttgattggccacaactttaagtagtgagtcctcgctatttttagggacttgctcgtagcc |
29746787 |
T |
|
| Q |
274 |
cttaatctgaacttggcgacgaaccttcttactattatttcctttaactcctctgtacggataacttgcttctgtggcaattccaccgtttactaagacg |
373 |
Q |
| |
|
|||||||||||||||| || | |||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| | |
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|
| T |
29746786 |
cttaatctgaacttggtgatgcaccttcttac---tatttcctttaactcccttgtatggataacttgcttctgtggcaattccaccgttttctaaattg |
29746690 |
T |
|
| Q |
374 |
aattcaaaagcatcaatcaaataaccaccgttgcatccatttgtccaattactt |
427 |
Q |
| |
|
|||| ||||||||||||| || |||||| || |||||||| |||||||||||| |
|
|
| T |
29746689 |
aatttaaaagcatcaatcttattaccaccattacatccattggtccaattactt |
29746636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 30072768 - 30072992
Alignment:
| Q |
15 |
gcttcattcttatatatcccttctctccccatctaatgccccatgaattctttactaaccaatatttagtaccgtcattcgatgtaccataaccaactat |
114 |
Q |
| |
|
||||||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
30072768 |
gcttcatccttatatatcatttctcaccccatctgatgccccatgaattctttactaaccagtatttagtaccgtcattcgatgtaccataaccaactat |
30072867 |
T |
|
| Q |
115 |
tattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttat----atcgataccaacggaaac |
210 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||| |||| ||| ||||| |
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|
| T |
30072868 |
tgttacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgaacatacctctcataaacatcaatactaaccgaaac |
30072967 |
T |
|
| Q |
211 |
cggttgattggccacaactttaagc |
235 |
Q |
| |
|
||||||||| |||||| || ||||| |
|
|
| T |
30072968 |
cggttgattagccacagctataagc |
30072992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 29733180 - 29733561
Alignment:
| Q |
11 |
tctcgcttcattcttatatatcccttctctccccatctaatgccccatgaattctttactaaccaatatttagtaccgtcattcgatgtaccataaccaa |
110 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||| | | |||||| || || |||||||||||||| |||| || || |||||||||||||||| |
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|
| T |
29733180 |
tctcgcttaatccttatataacccttctctccccatcttttactccatgagtttttcactaaccaatatttgataccatcttttgatgtaccataaccaa |
29733279 |
T |
|
| Q |
111 |
ctattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttatatcgataccaacggaaac |
210 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||| || || ||||| |||||||| ||||| |
|
|
| T |
29733280 |
ctatggttaaagcatggtttggcttagttccacattctcctgtaaaaatcccacttgagtaaaacttgaacatgcctctcatatcaataccaaccgaaac |
29733379 |
T |
|
| Q |
211 |
cggttgattggccacaactttaagcagtgaatcctcgctatttctagggacttgctcgtagctcttaatctgaacttggcgacgaaccttcttactatta |
310 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| || ||||| |||||||||| || ||||||||||| ||||||| | ||| ||||| |||| | |
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|
| T |
29733380 |
cggttgattggccacagctttaagtagtgaatcttcactattactagggacttcttcatagctcttaatttgaactttgtgacttacctttttac---aa |
29733476 |
T |
|
| Q |
311 |
tttcctttaactcctc---tgtacggataacttgcttctgtggcaattccaccgtttactaagacgaattcaaaagcatcaatca |
392 |
Q |
| |
|
|||||||||| ||| |||| |||||| |||||||||| ||||||||||| ||| |||| | ||||| |||||||| ||||| |
|
|
| T |
29733477 |
gttcctttaacaactcgcttgtatggataatttgcttctgtcgcaattccaccattttctaaaatgaatttaaaagcattaatca |
29733561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 29934815 - 29935001
Alignment:
| Q |
7 |
tatgtctcgcttcattcttatatatcccttctctccccatctaatgccccatgaattctttactaaccaatatttagtaccgtcattcgatgtaccataa |
106 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29934815 |
tatgtctcgcttcatccttatatatcctttctctccccatgaagttccccatgaattctttactaaccaatatttagtaccgtcattcgatgtaccatag |
29934914 |
T |
|
| Q |
107 |
ccaactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttata |
193 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
29934915 |
ccaactattgttacagcatggtttccctgagttccacattctcctgtagatattccactcgagtaaaatctgaacatacctcttata |
29935001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 29729840 - 29730076
Alignment:
| Q |
7 |
tatgtctcgcttcattcttatatatcccttctctccccatctaatgccccatgaattctttactaaccaatatttagtaccgtcattcgatgtaccataa |
106 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||| | | |||||| || || ||||||||||||||| |||| || || |||||||||||| |
|
|
| T |
29729840 |
tatgtctcgcttaatccttatataacccttctctccccatcttttactccatgagtttttcactaaccaatatttaataccatcttttgatgtaccataa |
29729939 |
T |
|
| Q |
107 |
ccaactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccacttatatcgataccaacgg |
206 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||| ||| || || ||||| |||| ||| | |
|
|
| T |
29729940 |
ccaactattgttacagcatggtttggcttagttctacattctcctgtaaaaatcccacttgagtaaaacttgaacatgcctctcatatcaatactaaccg |
29730039 |
T |
|
| Q |
207 |
aaaccggttgattggccacaactttaagcagtgaatc |
243 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29730040 |
aaaccggttgattggccacagctttaagcagtgaatc |
29730076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 316 - 442
Target Start/End: Original strand, 29606417 - 29606543
Alignment:
| Q |
316 |
tttaactcctctgtacggataacttgcttctgtggcaattccaccgtttactaagacgaattcaaaagcatcaatcaaataaccaccgttgcatccattt |
415 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||| |||| | ||||| ||||||||||||| || |||||| || |||||||| |
|
|
| T |
29606417 |
tttaactcccttgtatggataacttgcttctgtggcaattccaccgttttctaaaatgaatttaaaagcatcaatcttattaccaccattacatccattg |
29606516 |
T |
|
| Q |
416 |
gtccaattacttctgacatgatccaca |
442 |
Q |
| |
|
|||||||||||| ||||| ||||||| |
|
|
| T |
29606517 |
gtccaattacttgtgacacaatccaca |
29606543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 34759009 - 34759101
Alignment:
| Q |
229 |
tttaagcagtgaatcctcgctatttctagggacttgctcgtagctcttaatctgaacttggcgacgaaccttcttactattatttcctttaactcc |
324 |
Q |
| |
|
|||||| ||||||||||| |||||| |||||||||||| |||||||||||| ||||||| ||| || ||||||| ||||||||||||||| |
|
|
| T |
34759009 |
tttaagtagtgaatcctcactatttttagggacttgcttatagctcttaatccaaacttggtgacacacattcttac---aatttcctttaactcc |
34759101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 31194201 - 31194252
Alignment:
| Q |
123 |
catggtttggcttagttccacattctcctgtaaatattccacttgagtaaaa |
174 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
31194201 |
catggtctagctcagttccacattctcctgtataaattccacttgagtaaaa |
31194252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 31185387 - 31185425
Alignment:
| Q |
136 |
agttccacattctcctgtaaatattccacttgagtaaaa |
174 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
31185387 |
agttccacattctcctgtataaattccacttgagtaaaa |
31185425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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