View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_6 (Length: 455)
Name: NF10538_low_6
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 45088460 - 45088890
Alignment:
| Q |
17 |
ctaacctatcaaacaaagacataaaaacaaataaattccaacttattaaatttccacattcttgaatccttgcttatcttcaagcaattgctttggctgn |
116 |
Q |
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| T |
45088460 |
ctaacctatcaaacaaagacataaaaacaaataaattccaacttattaaatttccacattcttgaatccttgcttatcttcaagcaattgctttggctga |
45088559 |
T |
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| Q |
117 |
nnnnnnttatgaagaagtagacatcatgatgaatatggaactcaacattcagtttaagtgcaggcgcattgggcaaattctagatctaagggcactcagt |
216 |
Q |
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| T |
45088560 |
aaaaa-ttatgaagaagtagacatcatgatgaatatggaactcaacattcagtttaagtgcaggcgcattgggcaaattctagatctaagggcactcagt |
45088658 |
T |
|
| Q |
217 |
ttaagggccctcaaaatttcagtttaagggcactcaaaatttcatcaagaaaatgtcctaccataagtttaactgttaagcaaatatccattacatctct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45088659 |
ttaagggccctcaaaatttcagtttaagggcactcaaaatttcatcaagaaaatgtcctaccataagtttaactgttaagcaaatctccattacatctct |
45088758 |
T |
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| Q |
317 |
tataaaaacatgtatgaatcaaaagtttttaaggttgaaacgaagccaaagggttaaaatgcaaggtgggataaaacaaaccaaacatttgagtattaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45088759 |
tataaaaacatgtatgaatcaaaagtttttaaggttgaaacgaagccaaagggttaaaatgcaaggtgggataaaacaaaccaaacatttgagtattaaa |
45088858 |
T |
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| Q |
417 |
taatcagccttgctctttatttctttcatctc |
448 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
45088859 |
taatcagccttgctctttatttctttcttctc |
45088890 |
T |
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