View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_8 (Length: 409)
Name: NF10538_low_8
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 40638551 - 40638930
Alignment:
| Q |
18 |
aaattcatatctgatgcataaccacaatgtaggaggcgtgttcatagattaactaagtagttgttttctcaaaagggttttgtgtatgtcttttgatagc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40638551 |
aaattcatatctgatgcataaccacaatgtaggaggcgtgttcatagattaactaagtagttgttttcttaaaagggttttgtgtatgtcttttgatagc |
40638650 |
T |
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| Q |
118 |
atagaatgtgttgattgtctcactaaaaacgacttggatctaaatgatctgtttggagatttggttttgttgtcataggttactaggcggttaagctgga |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40638651 |
atagaatgtgttgattgtctcactaaaaacgagttggatctaaatgatctgtttggagatttggttttgttgtcataggttactaggcggttaagctgga |
40638750 |
T |
|
| Q |
218 |
cattgaataataagttattataaagggtgatttagtagtaggtaggaaaaggtgtgtaaatctactgctccataaattgtggcactctcatgatttgtga |
317 |
Q |
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| T |
40638751 |
cattgaataataagttattataaagggtgatttagtagtaggtaggaaaaggtgtgtaaatctactgctccataaattgtggcactctcatgatttgtga |
40638850 |
T |
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| Q |
318 |
ttagagagaagcttgcagaactggcttttaaaggtctgtgaccacgaactttgcaacaacatcaaggtttgttatgtctc |
397 |
Q |
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| T |
40638851 |
ttagagagaagcttgcagaactggattttaaaggtctgtgaccacgaacattgcaacaacatcaaggtttgttatgtctc |
40638930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 1014410 - 1014033
Alignment:
| Q |
18 |
aaattcatatctgatgcataaccacaatgtaggaggcgtgttcatagattaa-ctaagtagttgttttctcaaaagggttttgtgtatgtcttttgatag |
116 |
Q |
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|||||||||| ||||||||||||||||||||| |||| ||||||| ||| || ||||||||||||||||||||| | | | ||||| ||||||||||||| |
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| T |
1014410 |
aaattcatatttgatgcataaccacaatgtagaaggcctgttcattgatgaaactaagtagttgttttctcaaa-gagatctgtgtttgtcttttgatag |
1014312 |
T |
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| Q |
117 |
c-atagaatgtgttgattgtctcactaaaaacgacttggatctaaatgatctgtttggagatttggttttgttgtcataggttactaggcggttaagctg |
215 |
Q |
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||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1014311 |
gtatataatgtgttgattgtctcactgaaaacgacttagatctaaatgatctgtttgaagatttggttttgttgtcataggttactaggcagttaagctg |
1014212 |
T |
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| Q |
216 |
gacattgaataataagttattataaagggtgatttagtagtaggtaggaaaaggtgtgtaaatctactgctccataaattgtggcactctcatgatttgt |
315 |
Q |
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| T |
1014211 |
ggcaaggaataataagttattataaagggtggtt---tagtaggtaggaaaaggtgtgtaaatctactgcttcataaaatgcagcactaacatgatttgt |
1014115 |
T |
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| Q |
316 |
gattagagagaagcttgcagaactggcttttaaaggtctgtgaccacgaactttgcaacaacatcaaggtttgttatgtctc |
397 |
Q |
| |
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|||| |||||||||||||||||||| ||| ||||||| |||||| |||||| ||| ||||||||||||| ||||||||||| |
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| T |
1014114 |
gatttgagagaagcttgcagaactgaatttcaaaggtcggtgaccgcgaactatgccacaacatcaaggtctgttatgtctc |
1014033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 97 - 335
Target Start/End: Complemental strand, 1010212 - 1009985
Alignment:
| Q |
97 |
ttgtgtatgtcttttgatagcatagaatgtgttgattgtctcactaaaaacgacttggatctaaatgatctgtttggagatttggttttgttgtcatagg |
196 |
Q |
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|||||| ||| ||||||| ||||| ||||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| | |
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| T |
1010212 |
ttgtgtttgttttttgattgcatataatgttttgattgtctcactgaaaacgacttagatctaaatgatctgtttatagatttggttttgttgtcatacg |
1010113 |
T |
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| Q |
197 |
ttactaggcggttaagctggacattgaataataagttattataaagggtgatttagtagtaggtaggaaaaggtgtgtaaatctactgctccataaattg |
296 |
Q |
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| T |
1010112 |
--------cagttaagctggatatggaataataggttattataaagggtgatttagtag---gtaggaaaaggtgtgtaaatctacttctctataaaatg |
1010024 |
T |
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| Q |
297 |
tggcactctcatgatttgtgattagagagaagcttgcag |
335 |
Q |
| |
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| |||| ||| ||||||||||||||||||| |||||| |
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| T |
1010023 |
ctgtactcacataatttgtgattagagagaagtttgcag |
1009985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 1018799 - 1018747
Alignment:
| Q |
148 |
gacttggatctaaatgatctgtttggagatttggttttgttgtcataggttac |
200 |
Q |
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||||| |||||||||||||| |||| |||||| |||||||||||||||||||| |
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| T |
1018799 |
gacttagatctaaatgatctttttgaagatttagttttgttgtcataggttac |
1018747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 8317117 - 8317169
Alignment:
| Q |
148 |
gacttggatctaaatgatctgtttggagatttggttttgttgtcataggttac |
200 |
Q |
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||||| |||||||||||||| |||| |||||| |||||| ||||||||||||| |
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| T |
8317117 |
gacttagatctaaatgatctttttgaagatttagttttgctgtcataggttac |
8317169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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