View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10538_low_9 (Length: 402)
Name: NF10538_low_9
Description: NF10538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10538_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 9941889 - 9941543
Alignment:
| Q |
20 |
gccccgactgatatggcaattcttttcgtcacaactatatatcttatgctttcatttagccatgttttagtgttttctattttccttgttttggttcata |
119 |
Q |
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| T |
9941889 |
gccccgactgataaggcaattcttttcgtcaaaactatatatcttatgctttcatttagccctgttttagtgttttctattttccttgttttggttcata |
9941790 |
T |
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| Q |
120 |
atattgttgatatggtgaattatctttttcttaaggttctttgggatttagtttacacatcaataacttcgcatctactagtcatgttttttgaccattt |
219 |
Q |
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| T |
9941789 |
atatttttgatatggtgaattctctttttcttaaggttctttgggatttagtttacacatcaataacttcgcatctactagtcatgttttttgaccattt |
9941690 |
T |
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| Q |
220 |
ctttattaaggcttttggtgattttaggatgcaatggagaaagtgataaagaaaaaatttgctaaagcggtggagcctggaatagatgttatgtttcaag |
319 |
Q |
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| T |
9941689 |
ctttattaagg-ttttggtgattttaggatgcaatggagaaagtgataaagaaaaaatttgctaaagcggtggtgcctgcaatagatgttatgtttcaag |
9941591 |
T |
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| Q |
320 |
ctttaaggtttggaattgtgttgcaaaatctatactagctgtgtctgt |
367 |
Q |
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| T |
9941590 |
ctttaaggtttggaattgcgttgcaaaatctatactagctgtgtctgt |
9941543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 150 - 367
Target Start/End: Complemental strand, 8208217 - 8208001
Alignment:
| Q |
150 |
ttaaggttctttggga-tttagtttacacatcaataacttcgcatctactagtcatgttttttgaccatttctttattaaggcttttggtgattttagga |
248 |
Q |
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| T |
8208217 |
ttaagattctttgggggtttagtttacacatcaataacttcgcatctactagtcatgcttttcatcc-tttcattattaag-cttttggtaattttagga |
8208120 |
T |
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| Q |
249 |
tgcaatggagaaagtgataaagaaaaaatttgctaaagcggtggagcctggaatagatgttatgtttcaagctttaaggtttggaattgtgttgcaaaat |
348 |
Q |
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| T |
8208119 |
tgcaatggagaaagcaataaagaataaagttgctaaagcagtggtgcctgcaatagatgttatgtttcaagctttaaggtttggaatctcgttgcaaaat |
8208020 |
T |
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| Q |
349 |
ctatactagctgtgtctgt |
367 |
Q |
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||||| ||||||||||||| |
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| T |
8208019 |
ctataatagctgtgtctgt |
8208001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 9335302 - 9335260
Alignment:
| Q |
168 |
tagtttacacatcaataacttcgcatctactagtcatgttttt |
210 |
Q |
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| T |
9335302 |
tagtttacacatcaatacctttacatctactagtcatgttttt |
9335260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 166 - 361
Target Start/End: Complemental strand, 42363339 - 42363145
Alignment:
| Q |
166 |
tttagtttacacatcaataacttcgcatctactagtcatgttttttgaccatttctttattaaggcttttggtgattttaggatgcaatggagaaagtga |
265 |
Q |
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||||||||||| | |||||||||| ||||||||||||||| |||| | || |||| ||||||||||| ||||| ||||||||||||||||||||||| || |
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| T |
42363339 |
tttagtttacataccaataacttcacatctactagtcatgcttttcgtcc-tttcattattaaggctcttggtaattttaggatgcaatggagaaagcga |
42363241 |
T |
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| Q |
266 |
taaagaaaaaatttgctaaagcggtggagcctggaatagatgttatgtttcaagctttaaggtttggaattgtgttgcaaaatctatactagctgt |
361 |
Q |
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| T |
42363240 |
taaagaacaaagttgctaaagcagtggtgcctgcaatagatgttatgtttcaagctttaaggtttggaatctcgttgcaaaatctatagtagctgt |
42363145 |
T |
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