View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10539_high_11 (Length: 373)

Name: NF10539_high_11
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10539_high_11
NF10539_high_11
[»] chr3 (3 HSPs)
chr3 (19-363)||(8102818-8103162)
chr3 (228-363)||(40146992-40147127)
chr3 (75-156)||(40146875-40146956)
[»] chr4 (7 HSPs)
chr4 (42-225)||(7606716-7606899)
chr4 (42-207)||(7637565-7637730)
chr4 (42-156)||(7629170-7629284)
chr4 (42-156)||(7615781-7615895)
chr4 (42-225)||(7655596-7655776)
chr4 (253-301)||(7637486-7637534)
chr4 (253-283)||(7606673-7606703)
[»] chr7 (3 HSPs)
chr7 (42-203)||(8935557-8935718)
chr7 (42-207)||(8910622-8910783)
chr7 (253-301)||(8910814-8910862)
[»] chr6 (1 HSPs)
chr6 (56-156)||(6501060-6501156)
[»] chr8 (1 HSPs)
chr8 (75-156)||(15190673-15190754)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 8103162 - 8102818
Alignment:
Q  19 tgttgatggaacttcggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||     
T  8103162 tgttgatggaacttcggcatggtatttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgt 8103063  T
Q  119 tggtttccagatggtattcaacgtcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatcatctaataacg 218  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8103062 tggtttccagatggtattcaatgtcccatacgatttcccttcactaagaagctacaaaataaccaatctgatgggttgagtttttcatcatctaataacg 8102963  T
Q  219 aaaaactaaataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacgga 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8102962 aaaaactaaataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacggg 8102863  T
Q  319 tacgaacaaaatatcttcccttcaagcactttttgcacacctttg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8102862 tacgaacaaaatatcttcccttcaagcactttttgcacacctttg 8102818  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 363
Target Start/End: Original strand, 40146992 - 40147127
Alignment:
Q  228 ataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacggatacgaacaa 327  Q
    ||||||||||  |||| |||||||  |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| | || |  | ||| |||||    
T  40146992 ataacgaaaagttcaatccatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaa 40147091  T
Q  328 aatatcttcccttcaagcactttttgcacacctttg 363  Q
    |||||| ||||| ||| |||||||| |||| |||||    
T  40147092 aatatcatccctccaatcactttttacacatctttg 40147127  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 40146875 - 40146956
Alignment:
Q  75 gtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacgtcccatacgatttcc 156  Q
    ||||||||||||||||| |||||||||||  ||| || ||||| |||||||||  ||||||||||| |||||||||||||||    
T  40146875 gtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttcc 40146956  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 7606899 - 7606716
Alignment:
Q  42 atttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacg 141  Q
    ||||||| ||||| ||||||||||| ||||| ||| ||||| |  ||||||||||||||| ||||||||| || || ||||||||| ||||||||||||     
T  7606899 atttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaact 7606800  T
Q  142 tcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatcatctaataacgaaaaact 225  Q
    ||||||||||||||| ||||||| | ||| ||||||||| || | || || ||||||||||||||| |||||| | ||||||||    
T  7606799 tcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtctaatgaggaaaaact 7606716  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 7637730 - 7637565
Alignment:
Q  42 atttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacg 141  Q
    ||||||| ||||| ||||||||||| |||||| || |||||    |||||||||| |||| ||||||||| || || ||||||||| ||||| |||||||    
T  7637730 atttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacg 7637631  T
Q  142 tcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatc 207  Q
     || ||||||||||| ||||||  | ||| ||||||| | || |||| | ||||||||||||||||    
T  7637630 gcctatacgatttcctttcactttggagcaacaaaatgatcactctgataggttgagtttttcatc 7637565  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 7629284 - 7629170
Alignment:
Q  42 atttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacg 141  Q
    ||||||| ||||| ||||||||||| |||||| || |||||    |||||||||| ||||  ||||||  |||||| ||||||||| ||||||||||||     
T  7629284 atttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaact 7629185  T
Q  142 tcccatacgatttcc 156  Q
    |||||||||||||||    
T  7629184 tcccatacgatttcc 7629170  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 7615895 - 7615781
Alignment:
Q  42 atttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacg 141  Q
    ||||||| ||||| ||||||||||| |||||| || |||||    |||||||||| |||| ||||||||| || || ||||||||| ||||| ||||||     
T  7615895 atttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaaca 7615796  T
Q  142 tcccatacgatttcc 156  Q
     ||||||||||||||    
T  7615795 gcccatacgatttcc 7615781  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 225
Target Start/End: Original strand, 7655596 - 7655776
Alignment:
Q  42 atttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacg 141  Q
    ||||||| ||||||||||||||||| ||||||||| ||  |    |||||||||| ||   |||||| || || || ||||||||| |||| ||||||||    
T  7655596 atttcatcaattcgtgggctgaaatgtcacgtggttgtcatc---atcaaatatctaactccccaacgctggagcgttggtttccaaatggaattcaacg 7655692  T
Q  142 tcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatcatctaataacgaaaaact 225  Q
     || ||||||||||| || ||||   ||| |||||| || || |||| |||||| |||||||| || ||| || ||||||||||    
T  7655693 acctatacgatttcctttaactatagagccacaaaagaatcactctgatgggttaagtttttcgtcttctgatgacgaaaaact 7655776  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 7637534 - 7637486
Alignment:
Q  253 taggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaa 301  Q
    |||||||||||||||||||||||||||||||   |||||||||| ||||    
T  7637534 taggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaa 7637486  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 283
Target Start/End: Complemental strand, 7606703 - 7606673
Alignment:
Q  253 taggttatttcatttcacaaaggagaaaatc 283  Q
    |||||||||||||||||||||||||||||||    
T  7606703 taggttatttcatttcacaaaggagaaaatc 7606673  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 8935557 - 8935718
Alignment:
Q  42 atttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacg 141  Q
    ||||||| ||||| ||||||||||| |||||| || |||||    |||||||||| ||||  |||||||| ||||| |||||||| |||||| |||||||    
T  8935557 atttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttccggatggtgttcaacg 8935656  T
Q  142 tcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagttttt 203  Q
     || ||||||||||| ||||||  | ||| |||||| || || |||| ||||||||||||||    
T  8935657 gccaatacgatttcctttcactttggagcaacaaaagaatcactctgatgggttgagttttt 8935718  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 207
Target Start/End: Original strand, 8910622 - 8910783
Alignment:
Q  42 atttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacg 141  Q
    ||||||||||||| ||||||||||| |||||| || |||||    |||||||||| |||| ||||||||| || || ||||||||| |     |||||||    
T  8910622 atttcattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacactagagcgttggtttccaaa----gttcaacg 8910717  T
Q  142 tcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatc 207  Q
     || ||||||||||| ||||||  | ||| ||||||  | || |||| ||||||||||||||||||    
T  8910718 gcctatacgatttcctttcactttggagcaacaaaaggatcactctgatgggttgagtttttcatc 8910783  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 8910814 - 8910862
Alignment:
Q  253 taggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaa 301  Q
    |||||||||||||||||||||||||||||||   |||||||||| ||||    
T  8910814 taggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaa 8910862  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 6501156 - 6501060
Alignment:
Q  56 tgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacgtcccatacgatttc 155  Q
    ||||||||||||||||||||| |||||   ||||||||||||||||||||| |||| ||||| | ||||||| ||| |||||| ||| ||||||||||||    
T  6501156 tgggctgaaatttcacgtggttgttgt---aatcaaatatccaaactcccatcactagaacg-ttgtttccaaatgatattcagcgttccatacgatttc 6501061  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 15190673 - 15190754
Alignment:
Q  75 gtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacgtcccatacgatttcc 156  Q
    |||||| |||| ||||||||||   ||  |||||||||||||| |  |||||| |||| |||||||||||||||||||||||    
T  15190673 gtggttcttgccatcaaatatctgtacctccaacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttcc 15190754  T

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