View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_high_13 (Length: 349)
Name: NF10539_high_13
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 24 - 346
Target Start/End: Original strand, 12977021 - 12977342
Alignment:
| Q |
24 |
ggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttggaaatacaagtcagagaactgtttcataga |
123 |
Q |
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| T |
12977021 |
ggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagttttaaagatggattggatcctttggaaatacaagtcagagaagtgtttcataga |
12977120 |
T |
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| Q |
124 |
attgttcgtggtagaatggaagggcttgattctcttgcttgagagtaataaaaacattagatttagatgccataaacttgatggaataaccataaaagat |
223 |
Q |
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| T |
12977121 |
attgttcatggtagaatggaagggcttgattctcttgcttgagagtaataaaaacattagatttagatgccataaacttgatggaataaccataaaagat |
12977220 |
T |
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| Q |
224 |
atagttatgtnnnnnnnnnccttaacatacataaattgtatagagtttgtatcccnnnnnnnnntaggtgtagagtttaggtttggaattaggccttcga |
323 |
Q |
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| T |
12977221 |
ttagttatgtaaaaaaaaaccttaacatacataaattgtatagattttgtaaccc-aaaaaaaataggtatagaatttaggtttggaattaggccttcgt |
12977319 |
T |
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| Q |
324 |
ggtctatgctctttgattttgtc |
346 |
Q |
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||||||||||||||||||||||| |
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| T |
12977320 |
ggtctatgctctttgattttgtc |
12977342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 13012978 - 13013310
Alignment:
| Q |
24 |
ggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttggaaatacaagtcagagaactgtttcataga |
123 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||| |
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| T |
13012978 |
ggaacttagggttaaagttgcagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttcgtaatacaagtcagagaagtgtttcataga |
13013077 |
T |
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| Q |
124 |
attgttcgtggtagaatggaagggcttgattctc-ttgcttgagagtaataaaaacattagatttagatgccataaacttgatggaataaccataaaaga |
222 |
Q |
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| T |
13013078 |
attgttcgtggtagaatggaagggcttgattgtctttgcttgagagtaataaaaacattagatttagatgccataatcttgatggaataaccataaaaga |
13013177 |
T |
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| Q |
223 |
tatagttatgtnnnnnnnnnccttaacatacataaattgtatagagtttgtatccc------nnnnnnnnntaggtgtagagtttaggtttggaattagg |
316 |
Q |
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| T |
13013178 |
tatagttatgtaaaaaaaaaccttaacatacataaattgtatagagtttgtaacccaaaaaaaaaaaaaaataggtatagagtttaggtttggaattagg |
13013277 |
T |
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| Q |
317 |
ccttcgaggtctatgctctttgattttgtccct |
349 |
Q |
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| T |
13013278 |
ccttcgtggtctatgatctttgattttgtccct |
13013310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 13009420 - 13009623
Alignment:
| Q |
24 |
ggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttggaaatacaagtcagagaactgtttcataga |
123 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |||||| | ||||||||| |
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| T |
13009420 |
ggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattggatcctttggaaagacaagttagagaagtatttcataga |
13009519 |
T |
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| Q |
124 |
attgttcgtggtagaatggaagggcttgattctcttgcttgagagtaataaaaacattagatttagatgccataaacttgatggaataaccataaaagat |
223 |
Q |
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||||||||||||||||||||||||||||||||| || ||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13009520 |
attgttcgtggtagaatggaagggcttgattctgtttcttaaaagtaattaaaacattagatttagatgccataaacttgatggaacaaccataaaagat |
13009619 |
T |
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| Q |
224 |
atag |
227 |
Q |
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|||| |
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| T |
13009620 |
atag |
13009623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 13031778 - 13031941
Alignment:
| Q |
24 |
ggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttggaaatacaagtcagagaactgtttcataga |
123 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| |
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| T |
13031778 |
ggaagttagggttaaagttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagacaagttagagaagtgtttcataga |
13031877 |
T |
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| Q |
124 |
attgttcgtggtagaatggaagggcttgattctcttgcttgagagtaataaaaacattagattt |
187 |
Q |
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|||||| ||||||||||||||||||||||||| ||| || |||||||||||||||| |||||| |
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| T |
13031878 |
attgtttgtggtagaatggaagggcttgattcctttggttcagagtaataaaaacataagattt |
13031941 |
T |
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