View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10539_high_2 (Length: 463)
Name: NF10539_high_2
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10539_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 81 - 445
Target Start/End: Complemental strand, 5600057 - 5599689
Alignment:
| Q |
81 |
tattatacaagtattaacacgcaaaaa---ttgcactctcaattttccc-atctaacttacttacactaggcatgaaaatgtgtattaaagttttattag |
176 |
Q |
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| T |
5600057 |
tattataaaagttttaacacacaaaaaatattgcactctcaattttccccatctaatttacttacactaggcatgaaaatgtgtattaaagttttattag |
5599958 |
T |
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| Q |
177 |
tctcatattgtcaaggttcttagcttgttaaatatttgtgcttaggcactcatattcttt-aagtcaaattttaagagttctctctataaacaaatttag |
275 |
Q |
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| T |
5599957 |
tctcatattgtcaaggttcctagtttgttaaatatttgtgcttaggcactcatattcttttaagtcaaattttaagagtgagat--ataaacaaatttag |
5599860 |
T |
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| Q |
276 |
-aatgttgtctagatttattactttactgtaaaaatacattatgcaaggggagttagggtgaatatgttgactctgtctcaagtctaagatggacccaaa |
374 |
Q |
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| T |
5599859 |
caatgttgtctagatttattactttactgtaaaaatacattatgcaaggggagttagggtgaatatgttgactctgtctcaagtccaagatggacccaaa |
5599760 |
T |
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| Q |
375 |
caatatccttcaacttaaatagttgtgacatagtcacccacgtgtgcacgtgtgcacatgtgcaaccctat |
445 |
Q |
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| T |
5599759 |
caatgtccttcaacttaaatagttgtgacatagtcacccacgtgtgcacgtgtgcacatgtgcaaccctat |
5599689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 33848312 - 33848354
Alignment:
| Q |
36 |
tcaacggtgaatttcggggtaaagaataagtgaggcgaactct |
78 |
Q |
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| T |
33848312 |
tcaactgtgaatttcggtgtaaagaataagtgaggcgagctct |
33848354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 1740899 - 1740857
Alignment:
| Q |
36 |
tcaacggtgaatttcggggtaaagaataagtgaggcgaactct |
78 |
Q |
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| T |
1740899 |
tcaactgtgaatttcggtgtaaagaataagtgagacgaactct |
1740857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 31987012 - 31987073
Alignment:
| Q |
17 |
aggaaaagcaccggaaatatcaacggtgaatttcggggtaaagaataagtgaggcgaactct |
78 |
Q |
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| T |
31987012 |
aggaaaaacacaagaaacatcaactgtgaacttcggcgtaaagaataagtgaggcgagctct |
31987073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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