View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10539_high_21 (Length: 290)

Name: NF10539_high_21
Description: NF10539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10539_high_21
NF10539_high_21
[»] chr6 (2 HSPs)
chr6 (188-270)||(31884026-31884108)
chr6 (105-172)||(9069523-9069592)
[»] chr1 (1 HSPs)
chr1 (126-185)||(14245268-14245327)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 31884108 - 31884026
Alignment:
Q  188 cttcaaaagtgagtgtataagtgtttcgaatacccctccaaaatctttgatactctctaacaaaagaatgtttggatggacaa 270  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31884108 cttcaaaagtgattgtataagtgtttcgaatacccctccaaaatcttttatactctctaacaaaagaatgtttggatggacaa 31884026  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 9069592 - 9069523
Alignment:
Q  105 tggagtatttatgaatagtaaata--cggtgttgtatttgtgtgaacaaatttgtgtccatttatcattt 172  Q
    ||||||||||||||| |||| |||  ||| ||||||||||||| |||||||||||||   ||||||||||    
T  9069592 tggagtatttatgaacagtacatatacggagttgtatttgtgtcaacaaatttgtgtttgtttatcattt 9069523  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 14245268 - 14245327
Alignment:
Q  126 atacggtgttgtatttgtgtgaacaaatttgtgtccatttatcatttctctaaaataaaa 185  Q
    |||||||||||||||||||| || | ||||||||||| |||||| | ||||||| |||||    
T  14245268 atacggtgttgtatttgtgtcaagagatttgtgtccagttatcaatactctaaattaaaa 14245327  T

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